KEGG   Lotus japonicus: Lj6g3v0962610.1
Entry
Lj6g3v0962610.1   CDS       T04348                                 
Symbol
Lj6g3v0962610.1
Name
(Kazusa) -
  KO
K14409  protein SMG7
Organism
lja  Lotus japonicus
Pathway
lja03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Lj6g3v0962610.1 (Lj6g3v0962610.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj6g3v0962610.1 (Lj6g3v0962610.1)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     Lj6g3v0962610.1 (Lj6g3v0962610.1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     Lj6g3v0962610.1 (Lj6g3v0962610.1)
SSDB
Motif
Pfam: EST1_DNA_bind EST1
AA seq 976 aa
MMIIQTDKMAAPSSRERAQRLYDKNLELENKRRRSAQARVPSDPNAWQQMRENYEAIILE
DHAFCDQHNIEYALWQLHYKRIEEFRAYFSAALSSTSSNSSQGGKGPARPDRITKIRLQF
KTFLSEATGFYHDLIMKIRAKYGLPLGYFEDSENRIVMEKDGKKYADMKKGLLSCHRCLI
YLGDLARYKGMYGEGDSLNREFTAASSYYFQAASLWPSSGNPHHQLALLASYSGDELVAI
YRYFRSLAVDSPFTTARENLIVAFEKNRQSFAQLPGDAKSLAVKEPSGRLAGKGRGKVEA
KLATRGTGVDTSPRADGASSIQETYKFFCTRFVRLNGILFTRTSLETFTEVLALVSTGLR
ELLSSGQDEELNFGSDISENRLAIVRIVCILVFTVYNANKESEGQTYAEIVQRAVLLQNA
FTAAFELMGYIIERCAELSDPSSSYLLPGILVFVEWLACYPDLAKGNDLDENQESLRSKF
WNHCISFLNKLLSVGPVSVFDDEEDTCFNNMSRYEEGETENRLALSEDFELRGFIPLLPA
QTILDFSRKHSLGSDGDKERKARVKRILAAGKALASVVLVDKTMIYFDSKTKKFLIGVQP
QSSDDFVQAAYSVIQTAEESQEKPAADKSKVEVVQSNQHQYMEGDEDDEVIVFRPMVSEM
RADVAGSSWTPHEGMEPVLKASGGDLKFHVNSTSNPLNNLHHQTMPISVSGMIPQHLQSV
QPHTSRWLDEEISLANNLKGLGLFENGHVMKPSLQEAIGISNHVGLPIPIQQSIGVDTNV
FHGLSKASESVVPSKIDAIASSGVVSDAFAVKTSAMQPGMRKAPAPVSRPARHLGPPPGF
NHVPSKQSIEFTTSDSMSGNPILDDYSWLDGYQLQSSTKGLSSNGSLAYSQSNSYQLSNN
GLNGNISFPFPGKQVPSVPLQVEQQNVWQDYQPYELLNSHHDQQLQPQQLTTGTQQFSPL
PEQFQGQSIWTGRYFV
NT seq 2931 nt   +upstreamnt  +downstreamnt
atgatgataatacagacggataaaatggctgctccttcgtcacgggagcgtgcacagcgc
ctctatgataagaacctcgaattggagaataagcgccggaggtcagctcaggcacgggtc
ccatcagatccgaatgcatggcaacagatgcgtgagaactatgaagcaataattcttgag
gatcatgctttctgtgatcagcacaatattgaatatgctctctggcagttgcattataag
aggattgaggagtttagggcatatttcagtgctgctctttcttctaccagctcaaactca
tctcagggagggaaaggccctgcacgtcctgatcggataactaaaataaggctgcaattc
aagacttttctttcagaggcaactggattttaccatgaccttattatgaaaattagagca
aagtatgggcttccccttggttactttgaggattcagagaatcggattgtgatggagaaa
gatggaaaaaaatatgctgacatgaagaaaggtttattatcttgtcaccgctgtttaata
tacttaggtgatcttgctcgttacaaaggaatgtatggtgaaggtgactcattaaaccgg
gagttcacagcagcttctagttactactttcaagctgcatctctttggccttcaagtggg
aatccacatcatcagcttgctttattggcttcatattccggggatgagctggtggctatt
tatcggtattttcgtagtctggccgtggatagtccatttacaactgcaagagagaacttg
atagttgcatttgagaagaatcgtcaaagtttcgctcagcttcctggagatgctaaatct
cttgcagtcaaagaaccttctgggcgactagctggcaaaggaagaggaaaagtggaagca
aaacttgcaacaaggggtactggtgttgataccagtcctagagcagatggagcatccagt
atacaagagacttacaaattcttctgtactcggtttgtccggctaaatggaatattgttt
acacgaacaagcctcgagaccttcactgaagttcttgctcttgttagcactggtctgcgg
gaacttctgtcttcagggcaagatgaggagctgaattttggctctgatatttctgagaat
agacttgccattgtcagaattgtctgcattcttgtatttacagtttataatgcgaataag
gaatctgaaggtcaaacttatgcagaaattgttcagcgtgctgttctgcttcagaatgca
tttactgcagcttttgaattgatgggttacataatagagagatgtgcagagctgagtgat
ccttcttctagttatctcttacctggcattctggtttttgttgagtggttggcttgttat
ccagatcttgctaaaggcaatgatttggatgagaatcaggaaagtttgagatcaaaattt
tggaatcattgtatatccttcttgaataaattgctttcagttgggcctgtgtctgttttt
gatgatgaagaggatacttgctttaataacatgagcagatatgaggaaggggaaactgaa
aaccgacttgctttgtcggaggactttgagttaaggggatttattccgcttctccctgca
caaaccatcttggatttttcaaggaagcattcccttggaagtgatggtgataaggaaaga
aaagcccgggtcaaaagaattttagctgcagggaaggctttagcaagtgttgttctggtt
gataaaacaatgatatattttgattcaaagacaaagaaatttctcattggtgttcagcct
caatcctcagatgattttgttcaagccgcctattccgtcattcagaccgcagaagaatca
caagaaaaaccagcagcagataaatcaaaggtggaagttgttcagtcaaaccaacatcag
tatatggaaggagatgaggatgatgaagttattgttttcaggcctatggtgtctgagatg
cgagctgatgtggctggctcatcatggacaccccatgaggggatggagcctgttctaaaa
gcttcaggaggagatttaaaatttcatgttaactctacttctaatccactcaacaatcta
catcatcaaacaatgccgatttctgttagtggtatgattcctcaacacctgcaatcagtt
cagccgcatacatcaaggtggctggatgaggaaatttctctcgctaacaatttaaaaggt
cttgggttatttgagaatgggcatgtgatgaaacctagcttacaagaggctataggcatc
tcaaatcatgtcggacttcctattcctatccaacaatctattggtgtggatactaatgtg
tttcatggtctctccaaagcttcagaatctgtggtaccatccaaaattgacgctattgca
tcttcaggagtagtttctgatgcttttgcagtgaagacatcagccatgcaacctggtatg
agaaaagcccctgccccagtcagtcgacctgctaggcaccttggacctcctcctggtttc
aatcatgttccttctaaacaaagtattgaattcactacttcagattcaatgagtgggaat
ccaattctcgatgactacagttggttggatgggtatcaattgcagtcatcaaccaaaggc
ttaagctcgaatggttctcttgcttattctcagtcaaattcttaccaactcagtaacaat
ggcttgaacgggaatatcagctttccatttcctggaaaacaagttccatctgtacctctt
caggtggagcaacagaatgtttggcaagattatcaaccttatgagcttttaaattcacac
catgatcaacagcttcagccacaacagctcacaactggaactcaacagttttctcctctg
cctgagcaatttcaaggacagtcaatctggacaggtcgttacttcgtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (8)   

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