KEGG T03995: ABN16

Levilactobacillus koreensis: ABN16_02245

Entry

ABN16_02245       CDS       T03995

Name

(GenBank) RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

lko Levilactobacillus koreensis

Pathway

lko03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:lko00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABN16_02245
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lko03019]
    ABN16_02245
   03009 Ribosome biogenesis [BR:lko03009]
    ABN16_02245
Enzymes [BR:lko01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ABN16_02245
Messenger RNA biogenesis [BR:lko03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ABN16_02245
Ribosome biogenesis [BR:lko03009]
Prokaryotic type
  rRNA helicases
   ABN16_02245

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII AAA_22 AAA_30 CMS1 Helicase_RecD NAGidase

Other DBs

NCBI-ProteinID:

AKP63928

Position

complement(464294..465883)

AA seq 529 aa
MKFKELGLSDDLLKAVTTAGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL
EKIDKSNENVQALVVSPTRELAIQTQEEIYKLGRNERANVQVVYGGADIRRQIKSLKNHP
QVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPVERQTMLF
SATMPPEIKRVGVQFMQDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFFDVQSPD
LTIVFTRTKRRVDEISSGLQARGYNAAGIHGDLTQKRRTQIMNEFRHGQLDILVATDVAA
RGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREIEKLTKV
RMLPLKPPSDEEALVSQLGAAKDKVTELVNKTDTEKFAKTAEGLLSEFDAEDLVAALLND
LTKDDSNQVPVKITPERPLPKRGGKRHGGGGYHHGGGNRRGGNGGGGYRGHRSNDSRGGR
GGSRSHDSRNHDSHDSRSHGDNRNRRSNGSNGGRRNEGGSRGFTIRKKD

NT seq 1590 nt +upstreamnt +downstreamnt
ttgaagtttaaagaactgggtctttccgatgacctactgaaagcagttacgacagcaggt
tacgaggaagcgaccccaattcaagccgagacaatccccatggttttggctggtcaagat
gtgattggacaagcccaaaccgggactgggaagactgcggccttcgccttacctatcttg
gaaaagattgataagagtaacgaaaatgttcaggcgttggtggtttctccaacacgggaa
ctcgctatccaaacccaagaagaaatttataaattaggccggaacgaacgggctaacgtc
caagtcgtttacggtggggctgacattcgtcgccaaatcaaatccttaaagaaccacccg
caagtggttgttgggaccccgggtcgtttattggatcacattcgtcgtcacacgttgaag
ctcgaccacgtccaaatgttagtcttggacgaagccgacgaaatgttaaacatgggtttc
ttggatgatattgaagacatcatcaaacaattgccagtagaacgtcaaacgatgctcttc
tccgcaacgatgcctcccgaaattaagcgggtgggtgttcaattcatgcaagatcctaag
cacgtgaagattaaggctaaagaattaacgaccgacttgatcgatcaattctacgtccgt
tcccgtgactttgaaaagtttgatgtgatgacgcgtttcttcgacgtccaatcaccagac
ttgaccattgtcttcacacggacgaagcgccgggtcgacgaaatttccagtgggttacaa
gcccgcggttataacgctgccggtattcatggtgatttgacgcaaaagcgccggacacaa
atcatgaacgaattccgtcacggtcaattggatatcctggtcgcaaccgatgtggctgcc
cgtgggattgacattaacgacgtgacccacgtttacaactacgatattcctcaagatcca
gatagttacgttcaccgtgtcggccgtactggtcgtgccgggaagcatggggtctccatg
acttttgtgacgcctaacgaaatggactacttgcgtgaaatcgaaaagctgacgaaggtg
cgcatgctgcctttgaagccaccttcggatgaagaagctttggtgagccaattaggcgca
gccaaggacaaggttaccgaactggtcaacaagacggataccgaaaagtttgcgaagacg
gctgaaggcctgttgagcgaattcgatgccgaagacttagttgccgctcttttgaacgac
ttaactaaggatgacagcaaccaggttcccgttaagatcacgccagaacgaccactgcct
aagcgcggtggcaaacgtcatggcggtggcggttaccatcatggtggcggcaaccggcgt
ggtggcaatggtggcggcggttaccgcggtcatcggagcaacgactcacgcggcggccgt
ggtggctcacgttcccacgattcgcgcaatcatgattcacatgactcacgtagtcatggc
gataaccgaaatcgtcgtagtaacggcagcaacggtggtcggcgtaacgaaggtggaagc
cgcggcttcaccattcggaagaaagactag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

Download RDF

DBGET integrated database retrieval system