KEGG   Leisingera methylohalidivorans: METH_18900
Entry
METH_18900        CDS       T02961                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
lmd  Leisingera methylohalidivorans
Pathway
lmd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    METH_18900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmd03019]
    METH_18900
   03400 DNA repair and recombination proteins [BR:lmd03400]
    METH_18900
Enzymes [BR:lmd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     METH_18900
Messenger RNA biogenesis [BR:lmd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     METH_18900
DNA repair and recombination proteins [BR:lmd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      METH_18900
SSDB
Motif
Pfam: RQC DEAD HRDC Helicase_C RecQ_Zn_bind Rhodanese ResIII
Other DBs
NCBI-ProteinID: AHD02410
UniProt: V9VYG7
Position
complement(3719932..3721989)
AA seq 685 aa
MTVPAALTGASPILREIFGFDAFRPGQEEIVDAVTAGENVLAIMPTGGGKSLCFQLPALL
REGVTVVISPLIALMRDQVRALQEAGVTAGALTSGNTDEETEAVWEAIEAGRLKLLYMAP
ERLASGAAMGMLRRIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATA
DQETQEEIVQKLFDGEAPRSFLRGFDRPNIHLAFAAKDSPRRQILEFAAARKGQSGIVYC
GTRAKTEALSAALREAGHSACFYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKP
DIRWVAHADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRLRRTQVDEGLAPPERRA
ADHARLNALLGLAEALRCRRQKLLAYFGEAAEPCGNCDLCDTPADVFDGTTVVRKALSAV
LRTEEWFGSGHLIDILLGADNERIRAKRHDQLSVYGCGKEFGKRQWQAVFRQMMGHDLLR
PDPERHGALRFTEAALPILRGEQSIELRRDTIKSADRRPAVKALVSEEDAPLLSALKAKR
RALAEAQKVPAYVIFPDRTLIEMAETRPETLDRMARISGVGAKKLERYGDDFLDVITGAA
EQLHPARRKLAGREAGPAYDRLLEVQAQLARGGCGTLKPLTCSASLLAKVAQMRSDDEAG
ITRLLGERRAERFAAAFLDVLRGAG
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgacagtcccggcagccctgacaggcgcgtccccgatcctgcgcgagattttcggcttt
gacgccttccgccccgggcaggaggagatcgtcgacgccgtgaccgcgggcgaaaacgtg
ctggcgatcatgcccaccggcggcggcaaatccctgtgcttccagctgcccgcgctgctg
cgcgagggcgtcaccgtggtgatctcgccgctgattgcgctgatgcgcgatcaggtccgc
gccctgcaggaggcgggcgtcaccgccggcgcgctcacctccggcaacacggatgaggaa
accgaagccgtctgggaagcaatcgaggccgggcggctgaaactcctctacatggcgccg
gaacggctcgcctcgggcgcggcgatggggatgctgcggcggatcggcgtcagcctgatt
gcggtggacgaggcccattgcgtcagccagtggggccatgatttccgccccgattacctg
cgcatcggcgagctgcgccgcgcgctggatgtgccgctggccgccttcaccgccaccgcc
gatcaggaaacccaggaagaaatcgtccagaagctgttcgacggcgaggcgccgcgcagc
ttcctgcgcggatttgaccggcccaacatccacctcgcctttgccgccaaggacagcccg
cgccgccagatcctggagttcgccgccgcccgcaagggccagtccggcatcgtctactgc
ggcacccgcgccaagaccgaagcgctgtccgccgccctgcgcgaggccggccattccgcc
tgtttctaccacggcggcatggaggccgaggaccgccgcatcgtggaaacccgctttgcc
cgcgaggatgggctgatcgtggtcgccaccgtcgccttcggcatggggatagacaagccc
gacatccgctgggtcgcccatgccgacctgccgaaatccatcgaggcctattatcaggaa
atcggccgcgcggggcgcgacggcgcacccgccgaaaccctcaccctgttcggccccgac
gacatccgcctgcgccgcacccaggtggatgaagggctggccccgccggaacgccgcgcc
gccgaccatgcccggctgaacgcgctgctgggattggccgaggcgctgcgctgccgccgc
cagaaactcttggcctatttcggcgaggcggcggagccttgcggaaattgcgacctctgc
gatacgccggccgatgtgttcgacggcaccaccgtggtcaggaaggcgctgtctgccgtg
ctcaggaccgaggaatggttcggctccggccatctgatcgacatcctcttgggcgctgat
aacgagcggatccgcgccaagcgccatgaccagctgtcggtctatggctgcggcaaggag
ttcggcaaacgccagtggcaggcggtgtttaggcagatgatgggccacgacctgctgcgc
cccgatccggaacgccacggcgcgctccgctttaccgaagcggcgctgccgatcctgcgc
ggcgagcagtcgatcgagctgcgccgcgacaccatcaaatccgccgaccgccgcccggcg
gtcaaggcgctggtctcggaagaggacgcgccgctgctgtcggcgctgaaggccaagcgg
cgtgcattggccgaggcgcagaaagtgccggcctatgtgatcttccctgaccgcaccctg
atcgagatggccgagacccgcccggaaaccctggaccggatggcccgcatcagcggtgtc
ggcgccaaaaagctggagcgctacggcgatgattttctggacgtgatcaccggggcggcg
gaacagctccacccggcgcgccgcaagctggcgggacgcgaggcggggccggcttatgac
cggctgctggaggttcaggcgcagctggcgcgcggcggctgcggcacactgaaaccgctg
acctgttcggcctcgctcctggccaaggtggcgcagatgcgcagcgatgacgaggccggg
atcacaaggctgttaggggagcgccgcgccgaacgtttcgcggcggcgtttctggacgtc
ctgcgcggcgcgggctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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