KEGG   Listeria monocytogenes HCC23 (serotype 4a): LMHCC_0806
Entry
LMHCC_0806        CDS       T00801                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lmh  Listeria monocytogenes HCC23 (serotype 4a)
Pathway
lmh03030  DNA replication
lmh03410  Base excision repair
lmh03420  Nucleotide excision repair
lmh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lmh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LMHCC_0806 (ligA)
   03410 Base excision repair
    LMHCC_0806 (ligA)
   03420 Nucleotide excision repair
    LMHCC_0806 (ligA)
   03430 Mismatch repair
    LMHCC_0806 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lmh03032]
    LMHCC_0806 (ligA)
   03400 DNA repair and recombination proteins [BR:lmh03400]
    LMHCC_0806 (ligA)
Enzymes [BR:lmh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LMHCC_0806 (ligA)
DNA replication proteins [BR:lmh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LMHCC_0806 (ligA)
DNA repair and recombination proteins [BR:lmh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LMHCC_0806 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LMHCC_0806 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     LMHCC_0806 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LMHCC_0806 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: ACK39158
UniProt: B8DFG5
Position
815414..817429
AA seq 671 aa
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKR
VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVGDDIAYMCELKIDGLAVSL
QYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLE
TLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGTTVKSP
RWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTCDSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTS
INDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI
EYLPDEGGLNE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggctgataaaaaaaggtatgaggaactaatcaacatacttgatcagtacagctatgat
tattatgtaattgataatccaacagtagaagatgccgaatacgatcagaagatgcaagaa
ctacttaaaatagaagaagcgcatcccgagtgggttacacctgaatctccgtcaaaacga
gttggcggagaagttttagaaggttttaaaaaagtagcacatgacacaccgatgttaagt
cttgccaacgcttttaaccaagaagacttggcagactttgaccgccgaattcgcgacaaa
gtgggcgatgatattgcttatatgtgcgaacttaaaattgacggactagcagtatctctt
caatacgaaaatggtaaatataaacaaggtgctactcgtggtgatggaaccattggggaa
gacattactgctaacttgcgtacaattcgctccatcccaatgaaacttcaaaaggactat
tccattgaagttcgcggtgaggctttcatgccaaaacgctccttccaaaaactaaatgaa
attcgtgaagaagaaggccagatgttatttgccaatccacgaaatgctgcggctggctcg
cttcgacaattggacacaaaaattgcagcgtcgagaaatcttgatatcttcctttatgca
gtagcagattttggcgaaatgggcgttgaaactcatagcgccggcttagatatgcttgaa
acacttggtcttaaagtcaataaagaacgccgactttgcaacagtttagaagaagtttat
gcgtacattgaagaatggacagaaaaacgcgccggcttagcatacgatattgacggcatt
gttttaaaattaaacaacctagagcaacaacgccaaatggggaccaccgttaaatcgcct
cgttggtcgattgcttataaattcccagccgaagaagtaccaactaagttactcgatatc
gaattaaatgttggtagaacaggtgtgataactcccaccgccgtgttagaaccagtgaga
gtggcaggaacaaccgttagccgcgcttcgcttcataacgaagatttaattacggaaaaa
gacatccgcattggcgacaccgttttaatcaaaaaagctggcgatatcattccagaagtc
attaaaagcatcaccgaagaacgtagcggaagtgaagaacccttccatatgccgaaaaat
tgtccaacgtgcgacagtgaattggttcgtttagaggaagaagtggcgttgagatgtatt
aatcctaaatgcccagctcaaataaaagaaggacttatccactttgtttccaggaatgcg
atgaacattgatggcctcggcgaaaaagtgattatccagctgttttcacagcatttaatt
aaagatgtagcagatttgtttttcctttcgaaggagaaactgttagaattagaaagaatg
ggtgagaaatcagtaactaatttactggcatccatcgaagcaagtaaacaaaattcgctt
gaaaaattacttttcggcttaggcattcgccatgttggtgcaaaagccgccaaatcactt
gccattcatttcgatacaatggataatttgaaagtagcagacaaggaaacactgacaagt
attaacgacattggtgaaaaaatggcagacagtattgtgacctattttgcgaatgaagaa
gtacatgatttattagaagaactaaaaagggctggcgtcaatatgacctatacagggcca
aaactagaagatatgtctgaggaagaacttgttttcgcaggtaaaaccgttgtcttaact
gggaaattagaaaagttaacgcggaatgatgcaaaagcattaatcgaatccctcggagga
aatgtttctggaagcgtcagtaagaaaacggatgttgttgtagctggcagtgatgctggt
tctaaactagccaaagctgaagaactagccattcctatttggtcagaagaagacttaata
gagtacttaccagacgaaggtggattaaacgaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system