KEGG   Listeria monocytogenes EGD-e (serotype 1/2a): lmo2449
Entry
lmo2449           CDS       T00066                                 
Name
(RefSeq) exoribonuclease RNase-R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lmo  Listeria monocytogenes EGD-e (serotype 1/2a)
Pathway
lmo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    lmo2449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmo03019]
    lmo2449
   03016 Transfer RNA biogenesis [BR:lmo03016]
    lmo2449
Enzymes [BR:lmo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     lmo2449
Messenger RNA biogenesis [BR:lmo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     lmo2449
Transfer RNA biogenesis [BR:lmo03016]
 Prokaryotic type
  tRNA degradation factors
   lmo2449
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1
Other DBs
NCBI-GeneID: 987390
NCBI-ProteinID: NP_465972
Pasteur: LMO02449
UniProt: Q8Y4J0
Position
complement(2520415..2522796)
AA seq 793 aa
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADNFKLMVKALVKLEDSGTIVRSRK
NRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRK
GDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHK
VIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDL
VDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSP
LDIEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIF
ESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFD
FKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK
EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD
TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEH
SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSA
MKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDK
QKRQREKPIDKTRNFKSSSKNNRNKRRTGKSEDVKPKTERKDDEWYTKPKKKKKKKPFYQ
GVAKESPKKKKRR
NT seq 2382 nt   +upstreamnt  +downstreamnt
gtggaacaaaaacaaatggaagaaaaaattatgaatctattaacttcagcgcctgataaa
acatttgcgctagaagatttggaaatagaaatagctttaaataacgcggataattttaaa
ttaatggtgaaagctttagtaaaactggaagattccggaactattgtccgctcaaggaag
aatcggtatgcattaccagaaaaaatggacttagtaaaaggaacatttcgcgcacatgaa
cgaggttttggctttgttctcccagaagagaaagaaatggacgatatttttatcccacca
aatgaagtaaaagacgcaatgaatggcgacttagtttttgctacaattacgaaacgtaaa
ggcgataatttggcagaaggtacgattaagaaaattgtcgaacggaagacaacgcaaatc
gtcggaacttatatggaggacttagctggtactccaattgtgatgccggacgacaaacga
ctttttggtgaagtggaaattgatttagaagacggcttaaaaccagttgacgggcataaa
gttatcgttgaattgacggaatatgcaactggccatgcgcgtgcaagaggggttgttaag
tcaatcattgggcaccgcaatgacccgggagtggatattttatcgattattcataaacat
ggtatttcgattggcttccctgaagaggtaatggaacaagtaagtaaagcgccggatttg
gttgatgattcggatattggtaaccgtcgtgatttgcgtgaccaaatgattattacgatt
gacggagcagatgctaaggatttagatgatgctgttacggtgaaacaacttccgaatggc
aactggaaactgggtgttcatattgcggatgtaacgcattatgtgacagaaggctcgcca
cttgatatcgaagcgcaagagcgtggaacgagtgtttatttggttgaccgggtaattccg
atgttgccacataaactatcgaacggaatttgctcgcttaacccgcaagtagaccgtttt
accatgagttgtgaaatggaaatcgatcaagaaggtcatgtggttaaccacgaaattttt
gaaagtattattaaaacaacggaacgtatgacgtatacggatgtaaatgatattttagtc
gaaaaggatgaagctttacgcgaaaaatatgcgccaatcgttccaatgcttgaagcgatg
caaaatttagccgaaatccttcgtcgtaaacgtgaaaaacgtggcgcgattgattttgac
tttaaagaagcacgtgtagtagtggatgaagacggtcatccagaagcggtcgtgatgcgc
gaacgttcagcgggggagcatttaattgaagaatttatgcttgctgccaatgaaacagtt
gcagaacattttcactggatggatgtgccatttatttatcgtatccatgaagatccaaaa
gaagataaattagcacggttctttgaattcattacgaacttcggcttgattgtgaaagga
acagccaacgatattcacccagctgctttacaacaagtactagaagaagtaaaaggtaaa
ccggaagagatggttgtttcgactgttatgctgcgttcgatgcaacaagcgaagtatgac
acagtaagcgccggacactttggtttgtctactgatttctatacacatttcacgtcgcca
attcgtcggtacccggatttaatcgttcacaggttgattagagagtatttaattaacgga
gatgttcgtccggaaacgttagaaaaacgagctgaggagcttcctgagattgctgaacac
agctcaaaaatggagcgtcgcgccgttgaagcagagcgcgaaacagacgaactgaagaaa
acggaatttatggtcgacaaagtgggcgaacgtttcatcggaatcattagttcggtaacc
aattttggcttatttatcgaactaccgacgacgattgaaggccttgtccatgtgagcgca
atgaaaggcgattacttcaaattccatcaaaatcagttagcgatgattggcgaaagaaca
ggccaaatttatcgtatcggtgatgaagtggaagtcgaagtaactaaagtagacgtggat
gctcgtgaaatcgattttgcgcttcgtagtgaaggtaaaccaggtccagtgagcgataaa
caaaaacgccaacgcgaaaaaccgattgataaaacgagaaacttcaagagtagctcaaaa
aataatcggaataaacgcagaactggtaaatcagaagacgtgaaaccaaaaacagaacgc
aaagatgacgaatggtatactaaacctaaaaagaaaaagaagaaaaaacctttttatcaa
ggtgtagcaaaagaaagcccgaagaagaaaaaacgtcgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PASTEUR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (38)   

Download RDF
DBGET integrated database retrieval system