KEGG   Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1): lpg0954
Entry
lpg0954           CDS       T00199                                 
Symbol
mfd
Name
(GenBank) transcription repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
lpn  Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1)
Pathway
lpn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lpn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    lpg0954 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lpn03400]
    lpg0954 (mfd)
Enzymes [BR:lpn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     lpg0954 (mfd)
DNA repair and recombination proteins [BR:lpn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      lpg0954 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C MFD_D3 CarD_TRCF_RID ResIII UB2H DUF1474 Helicase_C_2 ERCC3_RAD25_C RecG_dom3_C AAA_30
Other DBs
NCBI-ProteinID: AAU27041
Pasteur: lpg0954
UniProt: Q5ZWY0
Position
complement(1036708..1040169)
AA seq 1153 aa
MNTKTLLYQPTKNKQIWGQLYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFF
LNPNQNTQELLFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRL
SPPEFLNQYALMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPMGSG
LPFRIELFDDEIESLREFDPETQRTIEKINQIHLLPAREFPLNEQSQLHFRRAFRESFPG
NPSHCPIYEAISNNQFPSGIEYYLPLFFDKTVTFFDYLPANAKICLIEEIQENAERFWRE
LNERYEQRRHDVSRPILPPDNCFINPTELLTKANHYEQVRLYHKPSEKKGALNFNIAKAP
QLPIDRKNIEPLRQLSEYCSDPTRRYLIVVESAGRREVLLDLLKSSHIIPKTQNSWLDFI
YDESPINITTGPLIYGCELTDKQIVIIVESQLFGEQSTPQRRSTQKSVDPDLIIRDMAEL
RLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAYAGDDKIYVPVTSLHMISRYTGVDS
EHAPLHKLGSEQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGF
PFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP
TTLLAGQHFESFRDRFADFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNN
ISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAK
IQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYI
GDIHNRLIMYKRIANAKTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAEQLGIQK
ISASAQQGKLDFSEKPSIDPGTLISLIQVHAKRYQMEGPQRLRFTLDSTSAEERIFEISS
LLNKLSPHSQTID
NT seq 3462 nt   +upstreamnt  +downstreamnt
atgaatacaaaaacgctactttaccaacccacaaaaaataaacaaatatgggggcaactc
tatggtagcagtctggcacttgctttagctgaatattgccaacaaacacccgggatcaaa
ttacttattacgcaagacaacctatgcgccagtcagttgcaggatgaactacaatttttt
ctaaacccgaaccaaaatacccaggagttattattttttcccgactgggaaaccttgcct
tatgatcaattctctcctcatcaagatattatttcagaaagactctacaccttaagcaga
gttcaacaaattaccaatggaatcatcatttcttcagccagcactttaatgcacaggctt
tctccgccagagtttttaaatcaatacgctttaatgcttaaagaggggcaaaagcttgat
ctgaactcgttcaggaatcagttgcaacaagctggataccattgtgttaataaagtgctt
gaacatggtgaatacgcactacgtggatctattattgacgtatatccgatgggtagtggt
ttacctttccgtatcgagctatttgatgatgaaattgaaagtctcagagaatttgatccg
gaaacacaacgcacaatagaaaaaatcaatcaaatccatttgttacctgctcgtgaattt
ccattaaatgaacaaagccaattacacttccgacgagctttcagagagtcttttcctgga
aatcccagccattgcccaatatacgaagcaattagtaacaatcaatttccatctggcata
gaatattatctgcccttgttttttgataaaaccgttaccttttttgattatctgccagcc
aatgccaaaatttgtttaattgaagaaatccaggagaatgctgagagattctggcgagaa
ttaaatgaacgctatgaacaaaggcgtcatgatgtcagccgccctattttacccccagat
aattgctttattaatcccaccgagttattaactaaagcaaaccattatgaacaagtacgc
ctgtatcacaaaccttccgaaaaaaaaggagccttaaatttcaacattgccaaagctcca
caactacccattgacaggaaaaatattgagccactccgccaattaagtgagtattgttct
gatccaactcgacgctatcttattgttgttgaaagcgcagggcgtcgcgaagtgttactg
gatctgcttaaatcaagccatatcattccaaaaacacagaactcatggttagacttcatt
tacgatgaatcccccatcaatataactactggcccattgatttatggctgtgaattaacc
gacaaacaaattgtgatcatcgttgagtcgcaattatttggtgagcaaagcacacctcaa
cgccgaagcactcaaaaatcagttgaccctgacttaatcatacgagatatggccgaactt
cgattgggcgctcctgttgtacatcttcaatttggagtaggtcgctatcaaggtttgcaa
tacattgactccaatggtacccccagtgagttccttgtccttgcttacgcaggggatgac
aaaatctatgtgccagtcacttctctgcatatgataagccggtatactggtgtggacagt
gaacacgcccctttgcataaactgggttctgaacaatggcaaaaggaaaaaaagaaagcg
gccgagaagattcatgatgttgcaattgaattattggatctctatgctaaaagagaagcc
cagccagggcaccaatacgatttcaatcaatccgaatatataaaattcgccagtggcttc
ccctttacagaaacaccagatcaacttcaagctattgaacaaattattaaggacatgcaa
tcaccaagaccgatggatcgcctaatctgtggtgatgtaggatttggcaaaacagaagtc
gccatgcgtgctgcattcgtagctgtacaaaatggaaaacaagtctgtatccttgctcca
actaccttgcttgcaggacaacattttgagtcatttcgcgatagatttgcagattttcct
gttaatattgaattattatcccgctttcgcagtaataaagagtccgaagcagtccttgcc
gcattgcaatcaggtaaagtagatattgtaattggaacccataaattattccaaaataat
atttctttcaaaaacctgggattactgattattgatgaagaacatcgatttggagtgaaa
caaaaggaacatattaaatcgcttcgaactcatgttgatattttatccatgactgctact
ccaattcccagaacattgaacatggcaatggcaggaatcagagatatttcacttattgca
acaccgcctgccaagcgtttggcaattaaaacattttggcaagaaaaaaatgatctcacc
atacgagaagcgatattgcgtgaaatattaaggggagggcaggtattttacctgcataac
aatgtacaaactatagaaagagtttgccaggatctggaagctttagtgcccgaggcaaaa
attcaaagcgcacatgggcaaatgcgagaaaggcaattagagcgcatcatgtctgatttt
tatcatcaccgatttaatgtcctggtttgcacaaccatcattgaaacagggatcgatatt
ccaaccgccaatacgattattatcgatcgtgccgataaatttggattagcccagctgcat
caattacgtggtcgtgttggacgctctcatcatcaagcctacgcttacttattaactccc
aatgaaaaactgttaacgccagatgcagtgaaacgtctcgaagccattgtgtctttagaa
gatttgggagcaggattcaccttggcaacacacgatctggaaattcgtggagcaggtgaa
ctccttggtgaagaacaaagtggtaatatgcatgccataggatttaatttatttatggaa
atgcttgaccgtgccgttaacgatttaaaggcaggcaaaactcctgaattgtcagcaccc
atgcatcaaggacctgaaattgacttgagaattagcgcgattatccccgaagattacata
ggtgatatacacaatagactcatcatgtataaaagaattgctaatgcaaaaactacccaa
caacttagagaactacaaatagaactgatagaccggtttggtttactcccgcaaccagtc
aaacatctgtttttgattactgaattaaagttaaaagcggaacagctcggcattcaaaaa
atcagtgccagtgctcaacaaggtaaattggattttagtgaaaaaccatcgattgaccct
ggaaccctgattagcttaatacaagtacatgccaaacgctatcaaatggaaggaccgcaa
cgtctgcgctttactttagacagcacgtcagcagaggaacgaatatttgaaatcagttct
ttattaaataaactgtctcctcattcccaaacgattgactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (100)   
   KEGG ORTHOLOGY (1)   
   RefGene (96)   
   NCBI-PROTEINID (1)   
   OC (1)   
   PASTEUR (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (120)   

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