KEGG   Lacticaseibacillus rhamnosus Lc 705: LC705_01600
Entry
LC705_01600       CDS       T00990                                 
Symbol
polC
Name
(GenBank) DNA polymerase III alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
lrl  Lacticaseibacillus rhamnosus Lc 705
Pathway
lrl03030  DNA replication
lrl03430  Mismatch repair
lrl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lrl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LC705_01600 (polC)
   03430 Mismatch repair
    LC705_01600 (polC)
   03440 Homologous recombination
    LC705_01600 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lrl03032]
    LC705_01600 (polC)
   03400 DNA repair and recombination proteins [BR:lrl03400]
    LC705_01600 (polC)
Enzymes [BR:lrl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LC705_01600 (polC)
DNA replication proteins [BR:lrl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     LC705_01600 (polC)
DNA repair and recombination proteins [BR:lrl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     LC705_01600 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII DNA_pol3_a_NI HHH_6 tRNA_anti-codon HHH_3 DEDDh_C T2SSK RNase_H_2 Zn-ribbon_8 YhfH DUF655
Other DBs
NCBI-ProteinID: CAR90439
Position
complement(1619826..1624160)
AA seq 1444 aa
MALSQHEMFEKLMDQLDLPADVRHDPSLADGSVQEVTIHEQSQRYDFTLAFPTILPFQIF
NTVATQLPIAFKQIAATRLTIAVAQPTITDELLAQYWQYVVQNSEIGTGIVRELCEKQVP
TLVNNRAVITAENEQIRQYLVNQGLGKLEETYQQVGFSGLRMQAQVDEEQAAQSVAAFEA
QKAAQTAKMAQAAAEVVKRQAAKQKQEPTNGPVQMGRQLKMSDPPQQMVTITQEERSVTV
EGYVFDVEVRELRSKRQLLIFKITDYSSSFIAKKFSNGADDEAMFARIKKGQWLRVRGSV
QEDNYSRELTINAQDIQTVSHPDPTDDVEGEKRVELHLHTNMSQMDATNSITDFVNRAKA
WGHKAIAVTDHAGLQAYPEAHTAADKAGLKMLYGVEINLVDDGTPVAYRAEEPRVLADAE
YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQFEEMIDPGFPLSELTINLTHITDDMV
HGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRML
HPERKNHKLDTLAKQYKVSLEHHHRANVDAEATGYLLYALEKEAAKMYNMTKLNQLNDRV
GAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVKYFYRVPRVPRSQLQKLREGLLVG
SACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLKDILQKI
VKIGDDLEKPVVVTGDVHYLDQHDAIYRKILIHSQGGANPLNRHSLPDVHFRSTREMLDD
FSWLGAEKAQKLVVTNSNLIADLIDDDITPVKDKLYTPEVPGVEEKLKHDVMATAYELYG
NPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVGSRGSVGSSLAATMAE
ITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDGHDIPFETFLGF
HGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYERDTGQ
QLRGAEIDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFD
FHSIHDNILKMDVLGHDDPTMIRMLQDLSGVEPKSIPTDDPGVMALFSGTESLGVTPEQI
NSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTL
KEVIGCRDNIMMDLIHWGMDDSMAFNIMEHVRKGRGIPDDWQKAMRENENVPDWYIDSCL
KIKYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAEDFDLAAMSHGKEAVKAAM
KEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHDFLIQDDHTILAPFR
AVPGLGDNVAKQIVAAREEKPFLSKEDLANRGKVSKTLIDYMTTNHVLDDLPDENQLSLF
DGLF
NT seq 4335 nt   +upstreamnt  +downstreamnt
ttggctttatcccaacatgagatgtttgaaaaattaatggatcagctcgatttaccagca
gatgtgcgacatgatccatcactggcagatgggtcggttcaggaagtcacgattcatgag
cagtcacaacgctatgacttcaccttggcgtttccgacgattttgccatttcagattttt
aataccgtcgccacgcaactgccaattgcgttcaagcaaattgcggcgacgcgattgacc
attgcggttgctcagccgacgattactgacgaactattggcgcaatattggcaatatgtg
gtgcaaaattcagaaatcggtactgggatcgttcgtgaactgtgcgaaaaacaggtaccg
acgctggtgaataatcgcgcggtgataacagcggaaaatgaacaaattcggcaatacctg
gttaatcaaggattaggcaaacttgaagaaacctatcagcaagttggcttttccggatta
cggatgcaggcccaagtagacgaagagcaagcggcgcagtctgtggcggcatttgaagcg
caaaaagcagcgcaaacggcgaagatggcccaagcagctgctgaagtggtgaagcggcaa
gcggctaagcaaaagcaagagcctacgaatggcccggttcaaatgggtcggcagttgaaa
atgagtgatccgccgcagcaaatggtcacgattacccaagaagaacgttcagtgaccgtt
gaaggctatgtgtttgatgtcgaagtacgggaattacgctcgaaacggcaattactgatt
ttcaaaataaccgattacagctccagttttattgccaagaaattcagcaatggtgctgac
gatgaggcgatgtttgcccgcattaaaaaaggccagtggttgcgtgtacgcggcagtgtg
caagaggacaactattcgcgcgaactcacgatcaatgcacaagatattcaaaccgtttcc
catcctgatccaaccgatgacgttgaaggcgaaaaacgggttgagctgcatctgcataca
aacatgagccagatggatgcgaccaactcaattaccgatttcgtgaaccgcgctaaagct
tggggacacaaggcgatcgctgtaaccgatcatgctgggctgcaagcttatccagaagcc
catactgctgctgataaagctggtttaaaaatgctatacggtgtcgaaatcaatttagtc
gatgatgggaccccagtcgcttatcgagctgaagagccgcgcgtgttggcagacgcggaa
tatgttgtttttgacgtggaaacaaccggtctttcagcagtctacgataaggtcatcgag
ttagctgccgttaaaatgaaagacggtcaggtgattgatcagtttgaagaaatgatcgat
cccggttttccgctgtcagaattaaccattaacctcacgcatatcaccgacgacatggtt
cacggttccaagtctgaagaagaagtgtttcggcttttccagcagttctgtgacggtgcg
atcatggtcggacataatgtcacgtttgatgtgggcttcttggataatggttatgagcgg
cacgggctggctgatattgataatccggtcattgatacgcttgagttatcgcgcatgctc
catcccgaacgcaaaaatcacaaactggataccttggctaagcaatacaaagttagcctg
gaacaccatcaccgcgccaacgtggatgctgaggcgaccggttatttgctatacgccttg
gaaaaagaagctgctaagatgtacaacatgaccaaactcaaccaattaaatgatcgcgtg
ggtgccggtgaggcttataaggctgcccgcccgagtcatgcgattgtatttgccaaaacg
caagccggcttgaagaatcttttcaagctggtgtccttgtcaaatgtcaaatacttctat
cgggtgccgcgagtaccacgcagtcagttgcagaaattgcgagaaggtttgctcgtcggt
tcggcttgctcaagcggcgaagttttcaccgctatgatgcaaaagggtgaggctgaagcg
cgcgccaaggcagcattttatgattatctcgaaattcaaccgccagccgtttaccagcca
ttactagaagccgatcttattaaaggcgagtcgcatttaaaagatattttgcaaaaaatt
gtcaaaatcggtgatgatctagagaaaccggttgtcgttaccggtgatgttcattatctg
gatcaacacgatgcgatttatcgaaagattctcattcacagtcaaggtggggccaatccg
cttaatcgtcatagtctgcctgatgttcattttcgctcaacccgggaaatgctggatgat
tttagctggttaggcgcagaaaaggcgcagaaactggtcgtcaccaactcgaatttaatt
gccgacttgattgatgatgatatcacaccggttaaagataagctttacacgccggaagtg
cccggggtggaagaaaagctcaaacatgatgtgatggcgacggcctatgagctttacggc
aatccgttgccagaaatcgtcgcacaacgcttggataaagaacttaaaagtattatcggg
aatggattctcagtcatttataacattgcgcaacggctggtattaaagtcgaacaaagac
gggtacttggttggttcccgagggtcggttggttcgagtttagctgcgacgatggccgag
attaccgaggtgaacccattgccgccacattatcggtgtccgaaatgccagtacagtgaa
ttctttacgcatggcgaagtcggatcgggctttgatcttccggataagacctgcccgaaa
tgtggaaccgagctgcataaagacggccatgacattccatttgagacgttcttaggcttc
cacggcgataaggtgccggatattgacttgaacttttccggtgactatcagcctgtggcg
cataactatatcaaagtgatgttcggcgaagatcatagtttccgtgccgggacaattgga
acggtggccgataaaaccgcttatggttatgtgaaagcttacgagcgcgacaccggtcaa
cagttgcgcggtgctgaaattgatcgactggcacaaggcgatactggcgttaaacgtacc
actggtcagcatccggcggggatcttgattgtcccggcagatatggatatttatgatttc
acaccgattcaatacccggcggatgatcaaaatgctgcttggatgaccacccactttgat
ttccattcaattcacgacaatattttgaaaatggatgtactgggccatgatgacccaacg
atgattcgtatgttgcaggacttgtcaggggttgagccgaaatcaattccaactgacgat
cccggagtcatggcgcttttttccggaaccgagagtttaggtgtgacgcctgaacaaatc
aattccaaaatgggcacgcttggcattcccgaatttgggacccgttttgtccgcggcatg
cttgaagaaaccaagccaacgaccttcagcgaattattacagatttccggattgtctcac
gggacggatgtgtggttaggcaatgcggaagagttaatcaagcaaggcattgtcaccttg
aaggaagtcatcggttgtcgtgataacatcatgatggacttgattcactgggggatggac
gattccatggcgtttaatatcatggaacacgttcgtaaaggccggggtatcccggatgac
tggcaaaaagcgatgcgcgaaaatgaaaatgtgccggattggtatattgattcctgcctg
aagattaaatacatgttccctaaagcccatgcgacggcgtatattctgatggcattgcgg
atcgcctggttcaaggtccattatccgctggtgtattacactgcttacttttccgtgcgg
gccgaagattttgatttagctgccatgagtcacggcaaagaagccgttaaagccgcaatg
aaggagattacggacaagggcatggatgcttccgctaaagaaaagcaattgttaaccgtt
ttggaaattgctaacgaatgcctggaacgtggctttaagatcaaaatgattgatgtcacc
aagtcagattcccatgatttcctgattcaggatgatcacaccattctagcgccattccgt
gcggttcctggtttgggcgataacgttgccaagcagattgtcgctgcccgtgaagaaaaa
ccattcttatcaaaagaagacctggctaatcgcggaaaggtttctaaaactttgattgat
tacatgacgaccaaccatgttttagatgatcttccagatgaaaaccaattatcacttttt
gatggcttattttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (27)   

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