KEGG   Ligilactobacillus ruminis: LRC_05030
Entry
LRC_05030         CDS       T01626                                 
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lrm  Ligilactobacillus ruminis
Pathway
lrm03030  DNA replication
lrm03410  Base excision repair
lrm03420  Nucleotide excision repair
lrm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lrm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LRC_05030 (lig)
   03410 Base excision repair
    LRC_05030 (lig)
   03420 Nucleotide excision repair
    LRC_05030 (lig)
   03430 Mismatch repair
    LRC_05030 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lrm03032]
    LRC_05030 (lig)
   03400 DNA repair and recombination proteins [BR:lrm03400]
    LRC_05030 (lig)
Enzymes [BR:lrm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LRC_05030 (lig)
DNA replication proteins [BR:lrm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LRC_05030 (lig)
DNA repair and recombination proteins [BR:lrm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LRC_05030 (lig)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LRC_05030 (lig)
   MMR (mismatch excision repair)
    DNA ligase
     LRC_05030 (lig)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LRC_05030 (lig)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT zf-NADH-PPase zf-tcix
Other DBs
NCBI-ProteinID: AEN77807
UniProt: G2SLW0
Position
547270..549285
AA seq 671 aa
MDKEEAKKELESLREKLTKWSREYYVLDAPTVEDHVYDENYKRLLELEAKFPELVTKDSP
SQRVGGRILTNFTKVEHEIPMLSLGDVFSKEELADFVKRLNENAGADFGYNCELKIDGLA
ISLTYEDGIFVKGSTRGNGTIGEDITENLKTINAVPLKLNEKISVEVRGECYMPKKSFVD
LNKKREAEGQPVFANPRNAAAGSLRQLDSKITAERNLSIFIYYLMEPEKFGVKTQSEALK
KMASWGFRVNGESRVCSTMDEIDAYLDEYQAKRAGLEYDIDGIVLKAEPFTVHELVGNTV
KVPRWAIAYKFPPDEQETIVRDIEWTVGRTGVVTPTAVMDPVLLAGTTVSRASLHNPDYL
NEKGIRLLDTVKLHKAGDIIPEISEVVLEKRPKDSKPYEIPTNCPECGAKLVHLDDEAAL
RCINPKCKALMKESLTHFASRNAMNIDGLGPKIIEQLFERGMINDVSDLYKLTFDDLLLL
DKFKEKSASNLLNAIDASRKNSLERLLFGLGIRHVGAKAAKLLAERFMTMDALARASKEE
IVAIETMGETIADSLSTYFNSEGANELLEELKSVGVNMSYLGKTAAELEEDASGSAFNGL
TVVLTGTLDRLKRSDAKKWLEEHGAKVTGSVTKKTNLLICGHDAGSKLVKAKELGTKIMN
EEEFLQKMEEK
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggataaagaagaagcaaaaaaagaacttgaaagtcttcgtgaaaagctgaccaaatgg
agcagagagtattatgttttggatgcgccgacggttgaagatcacgtctatgacgaaaat
tacaagcgtctgttggaactggaagcaaagtttccggagcttgtgaccaaggattcgcct
tcgcagcgcgtcggtggcaggatcttgacgaatttcacgaaagtcgagcacgaaatcccg
atgctttcattgggcgacgtgttttcaaaagaagaactggcggacttcgttaaacgtctg
aatgaaaatgcaggggctgattttggctacaactgcgaactcaaaatcgacggcctggca
atttcgctgacgtatgaagacggcatcttcgttaagggctcgacgcgcggaaacgggacg
atcggagaagacatcactgaaaatctcaaaacgatcaacgccgttccgctcaagctcaat
gaaaaaatttcggttgaagttcgcggtgaatgctacatgccgaaaaaatcgttcgttgat
ctgaacaaaaagcgcgaagcagaaggacagccggtgtttgccaatccgagaaatgcagcg
gccggatctttgagacagcttgattcaaaaattacggctgaacgaaatctgagcatcttc
atctactatctgatggaaccggaaaaattcggcgtcaaaacgcaaagcgaagccttaaag
aagatggcatcctgggggttcagggtcaacggcgagtcgcgcgtttgttcaacgatggat
gaaatcgatgcatatcttgacgagtatcaggcaaagcgtgcaggacttgaatatgacatc
gatggcatcgtgctcaaagcagagccgtttaccgtgcatgagcttgtgggaaacacggtc
aaggttccaagatgggcgattgcctacaaatttccgccggacgaacaggaaacgatcgtc
agagacattgaatggacggttggcagaacgggcgtcgtgacgccgacggccgtcatggat
ccggttttgctggcaggaacgaccgtttcaagagcctctttgcacaacccggattatctc
aacgaaaaggggattcgcttgcttgacaccgtcaaattgcataaggcaggagacatcatt
ccggaaatttcagaagtcgttttggaaaaacgcccaaaagattcaaaaccatatgaaatt
ccgacgaattgtccggaatgcggcgcaaaactcgtgcatctggatgatgaagcagcgctt
cgctgcatcaatccgaagtgcaaggcattgatgaaggaaagtctgacgcactttgcttcg
agaaatgcgatgaatatcgacggcctcggcccaaagatcattgaacagctgtttgagcgc
gggatgatcaatgacgtttccgatctttacaagctgacgtttgacgacttgcttttgctt
gacaagttcaaggaaaaatctgccagcaatttgcttaatgcaattgacgcaagtcgcaaa
aactcgcttgaacgcctgttgttcggccttggcattcgtcatgtcggtgcaaaggcggcc
aagcttttggcggagcgtttcatgacgatggatgccttggccagggcgtcaaaagaagag
atcgttgcaatcgaaaccatgggcgaaacgattgccgacagcctgtcgacctacttcaat
tcagaaggagcaaacgagctgcttgaagaattgaagagcgtcggcgtcaacatgagctat
ctcggaaagactgcggccgaattggaagaagatgcctccggtagtgcatttaacggtctg
accgttgttttgaccggcacgcttgaccgtctcaagagaagcgatgccaagaaatggctt
gaagagcacggcgcaaaggtcaccggcagtgtcacgaagaaaacgaatctgctgatttgc
ggacatgatgccggttccaaactggtcaaggcaaaagaacttggaacaaaaatcatgaat
gaagaagagttcctgcaaaagatggaggaaaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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