KEGG   Lacticaseibacillus rhamnosus LOCK900: LOCK900_0909
Entry
LOCK900_0909      CDS       T02730                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lro  Lacticaseibacillus rhamnosus LOCK900
Pathway
lro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOCK900_0909
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lro03019]
    LOCK900_0909
   03016 Transfer RNA biogenesis [BR:lro03016]
    LOCK900_0909
Enzymes [BR:lro01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LOCK900_0909
Messenger RNA biogenesis [BR:lro03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LOCK900_0909
Transfer RNA biogenesis [BR:lro03016]
 Prokaryotic type
  tRNA degradation factors
   LOCK900_0909
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AGP70724
Position
882105..884474
AA seq 789 aa
MTTVGHIRNELLATFRKNPNIDYSVQTLSRALKLSEGGDFKVLVQALNGMENDNLIHANH
EGRYALGGAPKVLTGTFRGNEKGFGFVAVEGLDNDVYVPAMNTDFALDGDTVEVRIVREA
RPNDSRGPEGEITKIVQRSLTTLVGEFKPFSDKDRAKSGFIGMVVSHEKKLKNFPVYVKD
TGNIPQLGDMTVTEITEFPTEYHPKLMYGIVVETLGNKNDPGVDIMSLVMQNHIKTEFPD
EVMDQTNAIPDHVTPEERVGRKDITDQAVVTIDGDDSKDFDDAVVVWKLPNGNFHLGVHI
ADVSHYVTEGSALDQEAFDRGTSTYLVDRVIPMLPFRLSNGICSLNPGVDRLAMSCDMEI
DHDGHVVNHEIYQSVIKSHARMTYNNVNKIVTDHDPEVMAEYQELVPMFEDMVELHQILY
KMRHARGAIDFEENEAKIIVDDMGHPTDIVLRERGVSERMIESFMLAANETVAEHYNKQH
LPFLYRVHETPDADRVKEFMEFIASFGITVPMKKGKEITPKQLQDVVTDVTGTPEEAMVN
VKLLRSLKQARYSPDPLGHFGLAAKYYCHFTSPIRRYPDLVVHRLIRDYAMEGTTDDVKT
SWNKKLPDIATQASMAERRSIDAERAVDDLKKAEYMADKVGEEFDAVVSGVTSFGMFVAL
PNTVEGLVHITRMSDDYYSFVESQMALVGERTKRTYRIGQSLRVKLDNVDIDQRQVDFSL
IPDEKTPTSDLGKLVKKDDRRDRRSNGSRPSFGNNGRGGNRNQHNNQRPHKPAGAPHQGK
HYNAKRGTK
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaccacagttggccatattcgtaatgaactattagcaacatttcgtaagaatccgaac
attgattattcggttcaaacactcagtcgcgcacttaagttaagtgaaggcggcgatttt
aaagtactcgtccaggcgttaaacggtatggaaaatgataacctgattcacgccaatcac
gaaggacgttatgcattgggcggcgcgcctaaagtcttgaccggcactttccgcggcaac
gaaaaaggctttggcttcgtggcagttgagggcttggacaatgatgtttatgtaccggcg
atgaacaccgattttgcgcttgatggcgataccgttgaagtgcggatcgttcgtgaagcc
cgtcccaatgatagtcgcggacctgaaggcgaaatcactaagattgtgcagcgcagttta
accacactggttggtgaattcaaaccattttccgataaagatcgggctaagtctggattt
atcggaatggtggttagtcatgaaaagaaactgaagaattttccggtttatgttaaagat
accggtaatattccgcaactcggcgatatgacggtgacggagattactgaatttccaacc
gaatatcatcccaagttgatgtatgggatcgttgtcgagacattgggcaacaagaatgat
cctggcgttgatattatgtcgctggtcatgcaaaaccatatcaaaacggaatttccggat
gaagtgatggatcagaccaatgccattcccgatcatgttacgccagaagaacgggttgga
cgcaaagatattaccgaccaggctgttgtcacgattgacggggatgacagtaaagacttt
gacgatgccgtggtggtttggaaattaccaaatggaaacttccatcttggggttcacatt
gccgatgtttcgcattatgtgacggaaggctctgcgttggatcaagaagcatttgatcgt
ggtaccagtacgtacttggttgatcgcgtcattccgatgttgccatttcgactatccaat
ggcatttgttcgttaaatccaggcgtagatcgattggcaatgtcgtgtgatatggaaatc
gatcatgatggtcatgtcgtaaaccacgagatttatcaaagtgtgatcaagagtcatgcc
cggatgacctacaacaatgtgaataaaatcgtgaccgatcacgacccggaagtcatggcc
gaatatcaagaactggtacccatgtttgaagacatggttgaattgcatcagatcttgtat
aaaatgcgtcatgctcgcggtgccattgattttgaagaaaacgaagccaaaatcattgtg
gatgatatgggtcatccaactgacatcgtattgcgcgaacgcggcgtttcagagcgcatg
attgaatccttcatgctggcagcaaatgaaaccgtggccgagcattacaacaagcaacac
ttaccgtttctctatcgggtacatgaaaccccggatgcagatcgcgtcaaggaattcatg
gagttcattgccagtttcgggattacggtaccgatgaaaaaaggcaaagagatcacccct
aaacaactgcaagatgttgtgaccgatgtaactggcacgccagaagaagccatggtcaat
gttaaattattgcggagcttgaaacaggcacggtactcaccagatccgctggggcatttt
ggcttagcggcaaaatactattgtcacttcacaagcccgatccggcgttatcctgacttg
gttgtgcaccgcttgattcgggattacgctatggaaggcaccactgatgacgtgaagact
tcttggaataagaagctgcctgatattgcgacccaagcatcgatggccgaacgtcgcagc
attgatgccgagcgtgccgttgatgacctgaagaaagctgaatacatggctgataaggtt
ggcgaagaatttgatgccgttgtcagcggtgtcacgagcttcgggatgtttgtggcactg
ccaaacaccgttgaaggcttggttcacatcacacgaatgagcgatgattactattcgttt
gtcgaaagtcaaatggccttagtcggtgaacgcaccaagcggacttatcgaatcgggcaa
tcgttgcgtgtgaagttagacaatgtggacatcgatcagcggcaagttgatttttcactg
attccagacgaaaaaacgccaaccagcgatttaggcaagttggttaaaaaagatgatcgc
cgtgatcgacgctcaaatggcagtcgcccgagcttcggtaacaatggtcgtggtggcaat
cgtaatcagcacaataatcaacgaccacataagccagcaggtgcgcctcatcaaggtaaa
cattataacgccaagcgcgggactaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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