KEGG   Limosilactobacillus reuteri TD1: N134_08170
Entry
N134_08170        CDS       T02745                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lrr  Limosilactobacillus reuteri TD1
Pathway
lrr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lrr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    N134_08170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lrr03021]
    N134_08170
   03400 DNA repair and recombination proteins [BR:lrr03400]
    N134_08170
Enzymes [BR:lrr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     N134_08170
Transcription machinery [BR:lrr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     N134_08170
DNA repair and recombination proteins [BR:lrr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      N134_08170
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_2 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AGR64635
UniProt: S5NQF0
Position
complement(1669781..1673416)
AA seq 1211 aa
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKQGLFDERIFGPTKDYEC
ACGKYKRIRYKGRVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVLDPGDTPLEKKQLLTEAEYRDKKAEYGDRFKAEMGAAAIQKLLA
DVDLEKEAAELKEELKEATGQKRTRAIRRLDILEAFIKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLKLQAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKLNQMGLPVP
MALELFKPFIMHELVKRGLSANVKAAKRKIDRSDDDVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKSMRLHPLVCSAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVSPSQDMVIGNYYMTTEDKGREGEGMIFKDTDEAELAYRNDYVSLQTRVGVQ
VSAFPEKPFTDEQRGKIMVTTVGKLLFNRIMPKDFAYINEPTDANIQNGVDDRFFLEPGQ
DIHEYLENAPLVPPFKKGFLSDLIAEVYKRYKVTKTSQFLDRIKDLGYYESTISGLTTAM
SDIHDLPEKPEILDKAQKQVALITKQFRRGLITDDERYERVIGAWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPNGKIMELPVKSNFYEGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVVVREKDCGTDRGLEVTAITNGNEMIEPLY
DRIMGRYTMKSVFDPKTGEKIVGKNVLIDEEMAQKIVDAGVKKVTIRSAFTCNTEHGVCE
RCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VEARNPKGRATITEVTGEVVSIEENPAERTKDITIKGETDTRTYTLPITARMKVAEGDFI
HRGAPLNEGSIDPKELIQVRDVLSTETYLLSQVQGVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDLLPGQLMDISQFRDANKDTLVAGNIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMSAYRNIKPKEVSVAAYSIKDI
EAKLKEEDKQN
NT seq 3636 nt   +upstreamnt  +downstreamnt
ttgattgatgtcaataaatttgaaagtatgcagatcggtctggcatctccagataagatc
cgtagttggtcatatggggaagttaaaaagcccgagactattaactaccggacattaaag
ccagaaaagcaaggtctgtttgacgaacgaatctttggcccaaccaaggattacgaatgt
gcgtgtggaaagtacaagcgtatccgttacaaaggtcgtgtttgtgaccgttgtggtgtt
gaggttactagtgcaaaagttcgtcgtgaacggatggggcacattgaattagctgctcct
gtatctcacatttggtactttaaaggaattccaagtcgaatggggcttgtattagatatg
agtccacgttcgcttgaagaagttatttactttgcttcatatgttgttcttgacccaggt
gatactccacttgaaaagaaacaacttttaactgaagctgaatatcgtgataaaaaagca
gaatatggtgaccgtttcaaagctgaaatgggagctgctgctattcaaaaacttttagct
gatgttgacttagaaaaggaagctgctgaattaaaagaagaattgaaagaagctactggt
caaaaacggactcgtgctattcgtcgtcttgatattcttgaagctttcattaagtcagga
aacaagcctgaatggatggttatggatgtaattccagttatgccacctgacttgcggcca
atggttcaacttgaagggggacgttttgctacctccgatttgaatgatttatatcggcgg
gttattaaccgtaataaccggttaaagcgacttcttaaattgcaagcacctggaattatt
gttcaaaatgaaaaacggatgctacaagaagctgttgatgcattaattgataacgggcgc
cgtggacgtccagtagctggaccaggtaatcgtccattgaagtcactttctcacttactt
aagggtaagcaaggacgtttccgtcaaaacttacttggtaagcgtgttgactactctggc
cgttccgttattgatgttggtccatcattgaagttgaaccaaatgggattaccagttcca
atggcacttgaattatttaagccatttattatgcatgaattggtaaagcgtggtctttct
gctaacgttaaagctgctaagcgtaagattgatcgcagtgatgatgatgtctttgatgta
ttggaagacgttattaaggaacacccagttctattaaaccgggcacctactcttcaccgg
ttaggtatccaagcgtttgaaccaatcttggtttctggtaagtcaatgcgtcttcaccca
ttagtatgttcagcatataacgctgactttgatggggatcagatggctattcacgttcca
ttatctgatgaagctcaagcggaggcacgtttgttaatgcttgctgctcaccatattctt
agtcctcgtgacggagaacctattgtttcaccatcacaggatatggttattggtaactac
tacatgactactgaagataagggtcgtgaaggtgaaggaatgatcttcaaggatactgat
gaagctgaacttgcttaccgcaatgactatgtttcattacaaacccgtgttggagttcaa
gtatctgcattccctgaaaagccatttactgatgaacaacgaggcaagatcatggtgaca
actgttggtaagcttcttttcaatcgaattatgccaaaagattttgcttatattaacgaa
ccaacagatgcaaatattcaaaatggtgttgatgatcgtttcttccttgaacctggtcaa
gatattcatgaataccttgaaaatgcaccattagttccaccatttaagaagggcttctta
tctgacttgatcgctgaagtatataagcgttacaaagttacgaagacttctcaattcttg
gaccgtattaaggacttaggttactacgaatcaactatttctggtttaacgactgctatg
tctgatattcatgatttgccagaaaaaccagaaattcttgataaggcacaaaagcaagtt
gctttaattactaagcaattccgtcgtggtttaattacagacgatgaacgttatgaacga
gtaatcggtgcatggaacgatgctaaggatgaagttcaaaacaagttaattgaacacatg
gatatccataacccaattaacatgatgtccgactctggtgcgcggggtaacatttcaaac
tttactcagttagccggaatgcgtggattgatggcatcaccaaacggtaagattatggaa
ttacctgttaagtcaaacttctatgaaggactttcagtgttggaaatgtttatttcatca
cacggtgctcgtaaaggtatgactgatacagccttgaagactgccaactcaggttactta
actcgtcgtctggttgatgttgcgcaggatgtggttgttcgtgaaaaagactgtggtact
gatcgtggacttgaagttactgctattacaaacggtaacgaaatgattgaaccgctttat
gatcgaatcatgggccgttacactatgaagtctgtctttgatcctaagactggtgaaaag
attgttggtaagaatgtccttatcgacgaagaaatggctcaaaagattgttgatgccggc
gtaaagaaagtaactattcgttcagcatttacttgcaacactgaacatggtgtatgtgaa
cgttgttatggacgaaatgcagctactggtgaccgtgtagaagctggtgaagctgtcgga
actgttgccgctcaatcaattggtgaaccaggtactcagttaactcttcgtaacttccat
actggtggggttgctggtaacgatgatattactcaaggtcttccacgtatccaagaaatt
gttgaagcacgtaatcctaaaggtcgtgcaacaattacagaggttactggtgaagttgtg
tctatcgaagaaaaccctgctgaacggacgaaggatattacgattaagggtgagactgat
acccgaacttacacccttccaattacagcacggatgaaagttgctgaaggtgatttcatt
caccgtggggcaccactaaatgaaggttcgattgatcctaaggaattaatccaagttcgt
gatgttctttctactgaaacttacctcttatcgcaagttcaaggtgtttaccggatgcag
ggtattgacttgttagataagcacgttgaaattatgattcgtcaaatgatgcggaaagtt
cgtgtcatggatccaggtgataccgaccttctaccgggtcaattgatggatatcagtcaa
ttccgtgacgctaacaaggataccttagttgctggaaatattcctgcaacagctcgtcct
gttattcttggtattactaaggctgccttagagacaaacagtttcttgtcagctgcttca
ttccaagaaactacacgtgtattaactgatgctgctattcgtggtaagaacgatccgttg
gttggattgaaagaaaatgttattattggtaagattattcctgcaggtactggtatgagt
gcttaccggaacatcaagccaaaagaagttagtgtagctgcttactcaattaaagatatt
gaggctaagttaaaagaagaagataagcaaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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