KEGG   Limosilactobacillus reuteri SD2112: HMPREF0538_21146
Entry
HMPREF0538_21146  CDS       T01551                                 
Symbol
gidA
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
  KO
K03495  tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
lru  Limosilactobacillus reuteri SD2112
Brite
KEGG Orthology (KO) [BR:lru00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lru03016]
    HMPREF0538_21146 (gidA)
   03036 Chromosome and associated proteins [BR:lru03036]
    HMPREF0538_21146 (gidA)
Transfer RNA biogenesis [BR:lru03016]
 Eukaryotic type
  tRNA modification factors
   Other tRNA modification factors
    HMPREF0538_21146 (gidA)
 Prokaryotic type
    HMPREF0538_21146 (gidA)
Chromosome and associated proteins [BR:lru03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Other chromosome partitioning proteins
    HMPREF0538_21146 (gidA)
SSDB
Motif
Pfam: GIDA GIDA_C GIDA_C_1st FAD_binding_2 FAD_oxidored Pyr_redox_2 AlaDh_PNT_C Pyr_redox HI0933_like ThiF Phage_holin_6_1
Other DBs
NCBI-ProteinID: AEI57356
UniProt: F8DR33
Position
complement(1120572..1122515)
AA seq 647 aa
MKSSEALQTSDAVQYEAGSYDVIVVGAGHAGSEAALAATRMGNKTLLVTINLEMVAFMPC
NPSVGGPAKGIVVREIDALGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRA
MKQTIEEEPNLTLRQATVDQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGE
LQYESGPNNSKSAVKLSENLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDEEPHHF
SFDTPDSAYIPISEQLSCWLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKI
VRFADKPRHQVFLEPEGRDTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIE
YDVVAPYQLHPTLETKIIKNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKEPFVLK
RSDAYIGVMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADFRLMEMGHNVGLVSDERLA
KMEEKKRQVAAEIKRLEEIKLKPSDDKVNEFIEAHGDNRLKDGIAAADLLKRPYFDYQTL
AEFIPAPEQELDRHVIEQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLA
TEGRQKLEKIRPETLAQASRISGVNPADIAILSVYVRQGTFSKKDRK
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgaagagttcagaagcattgcaaacatctgatgccgttcaatacgaagcgggatcatac
gatgtaattgttgtcggggcgggtcatgccggaagcgaggccgcccttgccgcaacccgg
atgggaaataagaccttgttggtaacaattaatcttgaaatggttgcttttatgccatgt
aacccctctgttggtggtccggcaaaaggaatcgtggtccgcgaaattgatgctcttggt
ggtgaaatgggccataacattgataagacctatgttcaaatgcggatgttaaataccggt
aagggtcccgctgtccgtgcattacgagctcaagcagataaacatgcttatcaccgtgca
atgaagcagacaattgaggaagaacctaaccttactctccgtcaagcaactgttgaccag
ttaattgttgaagatggtgtctgcaaaggtgttattactaatacaggagctcgttaccac
gctaagacggttgtactaactgttggaactgcagcgcgcggaaagatcattattggtgaa
ttacagtatgaatctggtccaaataactctaagtcagcggtaaaactttcggaaaatctt
gaagaacttggctttgatcttgagcgttttaagacgggaacgccaccacgggttaatgga
aagacaatcgactatagtgtaacggaagaacaacccggggatgaggaaccacatcacttt
agttttgatactcctgatagtgcctatattccaattagcgaacaattatcttgttggtta
acttatacaaatgaagggacccatgccattattcgggaaaatcttagccgggctccaatg
ttctctggtgttatcaagggtgttgggccacgctactgtccttcaattgaagataagatt
gttcgttttgctgataaaccgcggcaccaagtcttccttgaaccagaaggccgggatacg
gatgaatattaccttgacggaatttcgacatcaatgccagaagaaatccaacaaaagatt
gtgcactcaattaaggggttagaaaatgcagaaatgatgcgtcctggatatgcaattgaa
tacgatgtagttgcgccgtaccaacttcacccaaccttggaaaccaagatcattaagaat
ctctatactgcaggccaaacaaacggttcttcaggttatgaagaagcagcggggcaagga
ttaattgcagggattaatgcaggattacgggcacaaggcaaggaaccatttgtccttaag
cgttcggatgcatatattggtgtgatgatcgacgacctagtaacaaagggaacgaaagaa
ccttaccgtttacttacaagtcgggcagaatatcggctaattttacgtcatgataatgct
gatttccggttaatggaaatgggtcataatgttggcttagttagtgatgagcggcttgct
aaaatggaagagaagaagcgccaagtcgcagctgaaatcaaacgattagaagaaattaag
ctcaagccaagcgatgataaggttaacgaatttattgaagcgcacggggataatcgctta
aaagatggaattgcggcagctgacctcttgaagcgaccatacttcgattatcaaacgttg
gccgaattcattccagcaccagaacaggaacttgatcgtcatgtgattgagcaggttgaa
attcaattgaaatatgctggttacatcaagaaagaggaagttaaggttgaacggatgaaa
cggatggaagctaaacggattccagatgatatcgattatggtgatattgatggtctagca
actgaaggacgtcaaaagcttgaaaagattcgtccagaaactttagcccaagcttcacga
attagtggagttaaccccgctgatattgcaatcttgagtgtttacgtccgtcaggggacg
ttttccaagaaggatcgtaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (28)   

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