KEGG   Ligilactobacillus salivarius JCM1046: LSJ_1079c
Entry
LSJ_1079c         CDS       T03340                                 
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lsj  Ligilactobacillus salivarius JCM1046
Pathway
lsj03410  Base excision repair
lsj03430  Mismatch repair
lsj03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lsj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    LSJ_1079c (recJ)
   03430 Mismatch repair
    LSJ_1079c (recJ)
   03440 Homologous recombination
    LSJ_1079c (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lsj03400]
    LSJ_1079c (recJ)
DNA repair and recombination proteins [BR:lsj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     LSJ_1079c (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     LSJ_1079c (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LSJ_1079c (recJ)
SSDB
Motif
Pfam: ssDNA-exonuc_C DHH RecJ_OB DHHA1 RmlD_sub_bind
Other DBs
NCBI-ProteinID: AIR10753
UniProt: A0A089QFZ7
Position
complement(1084500..1086833)
AA seq 777 aa
MIDAKKEWQEIELSENEHLDELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLYD
PNFMHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEYYIPDRF
KDGYGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDA
YAIIHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQDVLDLVALGTVADLVSLTGENRI
LVKYGLQLLQQTMRPGLQSLYKVAGIEVPTITEETIGFSLAPRLNALGRMENGSLGVELL
TTLDEERAEELAKTTNQLNIKRQEEVSKIVEEAVAQLANKSENHLVNVVAGNNWHEGVVG
IVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQMFDALDSHRDILMKFGGHHMACG
LSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKVIPVNLDDVNLDLEAQLEALAPFGTDN
PRPVFEFKDYEVNTVQEIGQQKNHLKLQLQSNNSQVDALDFGIGSKKISEIERNKNSVRL
IGTLGKNVWQSRVNLQIMIEDILLDDSNTGTVVEIQRKNKLTKSMFQQQATYVFFDKKLY
NQVMPYLADDSEAYLYNFSDDKKLNCDTLIVVDCPDNIEKLKSLLAKAIVKHFIFVGYTR
ENTYLNGLPTREQFGRLYKFSQTHTNVNIRRDLQKLADYLKLKRELLVFMINVFFEAKFV
KIENGLMSGNTNVTPHNLEDTNSYQAYLQKMKAQKSLIYSKSTDLQKWILRYLDENN
NT seq 2334 nt   +upstreamnt  +downstreamnt
ttgattgatgctaaaaaagaatggcaagaaattgaattatcagaaaatgaacatcttgat
gaattaattgaagaaacaggttttcctaagatagttttacaaatattaatggaaagagga
tacgattctcttgaagctattaacaattttttagatccagatgctcgtggattgtacgat
cctaattttatgcatgatatggaactaggtgtagatagaattcaacaagcaattatgaat
ggtgaaaaaatagtcatttatggagactatgatgttgatggaatcacaagtactgctctt
atgtacgaaactcttgaagaattaggagcagaagttgaatattatatacctgatagattt
aaagatggctatggtcccaatgtggaagtctataagcgtttgattgatgaaggtgttagt
ttaattgtaactgtggataatggggtagctggacatgaagccattgattatgcaaatcaa
catggagtagatgtagtcgtaacagatcatcatgagttacctgaaactttgccagatgca
tatgcgattatccatcctcgtcatcctgagggagattatccttttggtgaattatctgga
gtaggtgtggcttttaaggtggcggctgctttactagaagaattaccacaagatgtatta
gatttagttgctttaggaaccgtagctgatttggtttctctaactggtgaaaatagaatc
ttagttaagtatggtctgcaattgttacaacaaacaatgcgtcctggattacaaagttta
tacaaagtagctgggatagaagttcctacaattacggaagagacaattggtttttcactt
gctccacgtttaaatgcattaggaagaatggaaaatgggagtttaggggtagaattacta
actactttagatgaggaaagagctgaagagttagcaaaaactaccaaccaattaaatata
aaaaggcaagaagaagttagtaaaatcgttgaagaagcggtggcacaattagctaataaa
tccgaaaatcatttagtcaatgtagtggctggaaataactggcatgaaggtgtagtgggc
atcgtggcaagtaggttagtcgatatgactggcaaaccttctctagttcttagcattgat
gaaaaaacaggtattgctaaaggctcaggaagatccattgaagcgtttcaaatgtttgat
gccttagatagtcatcgagatattctcatgaaatttggaggacatcatatggcttgtggc
ttgtctttagatagggagaagttgtcagatttacaacaagttgttgatgaagaaggaaag
aaacaaggaattgaacatgctacaaaaccggtagtaaaagtcattcctgttaatttagat
gatgttaatttggatttagaggcacaattagaagctttagcaccatttggtacagataat
cctcgtcctgtttttgaattcaaagattacgaagtgaatacagttcaggagattgggcaa
caaaaaaatcatcttaaacttcaattgcaatccaataactctcaagtggatgccctggat
ttcggaattggtagcaaaaaaatttctgaaattgagcgaaataaaaattcagttcgtttg
atagggactttgggaaaaaatgtttggcaaagtagggttaatcttcaaattatgatagaa
gatattttgttggatgacagtaatactggcacagttgttgagattcaacgaaaaaataaa
ctaactaagtcaatgtttcaacaacaagcaacatatgttttctttgataaaaaactatac
aatcaagtaatgccatatctagctgatgatagtgaagcttatttatataattttagcgat
gataagaagttaaattgtgatacgttgattgtggtagattgcccagataatatagaaaaa
ttaaagtctctacttgctaaagcaattgttaagcattttatttttgttggttatactaga
gaaaatacttacttaaatggcttgccaactagagaacagtttggtagactatataagttc
tcgcaaacacacactaatgtaaatataagaagagatttacagaaattggcagactattta
aaactaaaacgcgaacttttagtttttatgattaatgtgttttttgaagcgaaatttgtt
aaaatagaaaatgggttaatgagtggaaacacaaatgtaactccgcataatttagaagat
acaaattcatatcaagcatatttacaaaaaatgaaagcacaaaaatcgctaatatacagc
aaatcaacagatttacagaagtggatattaaggtatcttgatgaaaataattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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