KEGG   Candidatus Liberibacter solanacearum: CKC_01280
Entry
CKC_01280         CDS       T01373                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
lso  Candidatus Liberibacter solanacearum
Pathway
lso03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lso00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CKC_01280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lso03019]
    CKC_01280
   03016 Transfer RNA biogenesis [BR:lso03016]
    CKC_01280
Enzymes [BR:lso01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     CKC_01280
Messenger RNA biogenesis [BR:lso03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CKC_01280
Transfer RNA biogenesis [BR:lso03016]
 Prokaryotic type
  tRNA degradation factors
   CKC_01280
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 PCB_OB
Other DBs
NCBI-ProteinID: ADR52007
UniProt: E4UCB7
Position
complement(245051..247150)
AA seq 699 aa
MFDVHTVEVDWAGRPLKLETGRIAQQSDGAVLATYGETVVLATVVFDRNLKKDQDFFPLT
VNYQERTYAVGKIPGGYLRRESRPTENEVLISRMIDRSIRPLFPKHYKNETQVIINVMQH
DLENDPHVVSMVAVSAALMLSGLPFEGPIAGAQVDYVDDKYVLNPPLDGEKGSLDLFVSG
TRDAVLMVELEANQLSEDVVLDAIMFGHAECKPVIEAISKLVKMCAKEPIFFDSKDLSKL
EEEMFHMFGADLRNSSFIPEKSVRCEAINDIKEKVFSHFCTEDSSWTEEEVSSVFEDMHA
KVVRASIVENKIRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDE
QYVDSLAGTQRNDFMMHYNFFPFSVGEVGRIGAPSRREIGHGRLARRAIHPILPQAAQFP
YTLRIVSEITGSNGSSSMATVCGASLALMDAGVPISKPVAGIAMGLVKEDDQFVVLSDIS
GEEDHFGHMDFKVSGTDSGITAMQMDMKIRGISKDIIMVALQQGKRGRLHILNEMSKVIS
ESRLQLGEFTPRVEIMVIPPDQIRNVIGVGGKVIRNIVEKTGAKVNIDDDGTIKIASSSP
AEIEAACEMIRLITDVPEVNKIYKGHVVKVMDFGAFVNFCGARDGLVHISHLSTERVAKT
SDIVKEGDVVWVKLLDFDDRGKIKLSMKVVDQNTGKPIS
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgttcgatgtgcatacagttgaagttgattgggctgggcgtccacttaaattggaaact
ggtaggattgcccaacaatctgacggtgctgtgttggcaacttatggagaaacagttgtt
ttggctactgttgttttcgatagaaatcttaaaaaagaccaggatttctttcctttgact
gttaattatcaagaacggacatatgctgttggtaagattccaggaggttatttaaggcgc
gaatctcgtcctactgaaaatgaagttttgatttctcgtatgattgatcgttctattcgg
ccgttgtttccaaaacattataaaaatgagactcaagtaatcattaatgttatgcagcat
gatttggaaaatgatcctcatgttgttagtatggtagctgtttcggctgcgttaatgttg
tcggggctgccgtttgaaggtcctatcgcaggtgcacaagtagattatgttgatgataag
tatgttttaaatccaccgttagatggagaaaaaggatctctggatctttttgtttcagga
actcgagatgctgtacttatggttgaattagaggctaatcagttgtcggaagatgttgtt
cttgatgctatcatgtttggtcatgctgaatgtaaacctgttattgaagctatttcaaag
cttgtaaagatgtgtgcaaaagaaccgatatttttcgattcgaaagatttgtcaaaatta
gaagaggaaatgtttcatatgtttggggcggatcttcggaattctagttttattcctgaa
aaatctgtgcgttgtgaagctattaatgacattaaagaaaaagttttttctcatttctgt
actgaagattcttcttggactgaagaggaagttagttctgtctttgaagatatgcatgcc
aaagttgttcgagcaagtatcgttgaaaataaaattcgtatggatgggcgtgatgttgag
acggtgcgtgatattagtgcgcaagttggtcttttacaacgcacacatggttcatcgttt
ttttcacggggtagtactcaagcgatagttgttgttactcttggaacaaaagaagatgaa
cagtatgttgattctttagcgggaacgcaaagaaatgattttatgatgcactataatttt
ttccctttctctgttggggaagttggtcgcataggtgctcctagtcggcgtgagattggt
catggtagattggcacgacgtgctattcatcctattttgccgcaagctgcgcaatttcct
tatacgttgcgtatagtttctgaaataacagggtctaacggttcttcttcaatggcgacg
gtgtgtggtgcttcgttagcgttgatggatgctggagttcctatatctaaaccagtcgct
ggaatagctatggggcttgtcaaagaggatgatcaatttgttgttttgtctgatatctca
ggcgaggaagatcattttgggcatatggattttaaagtttcagggacggattcaggcatt
actgctatgcaaatggatatgaaaataagaggtatttccaaggatattattatggttgct
ttgcaacaagggaaaagaggtcgtcttcatattcttaatgaaatgtctaaagttatatca
gaaagtcgtttgcaacttggtgaatttactccacgggtcgagattatggttattcctcct
gatcagatacgaaacgttattggagtagggggtaaagtaatccgtaatatagttgaaaag
acaggggcaaaagttaatatagatgatgatggtactataaaaatagcatcgtcttctcct
gcagaaatagaagctgcttgtgaaatgatacgcttaattactgatgtgccagaggttaat
aagatttataaaggacatgtggttaaggttatggactttggtgcttttgttaatttttgt
ggtgctcgtgatgggcttgtacatatatctcatctttccaccgaaagggtcgctaagacg
agtgatatagtaaaagaaggtgatgtcgtatgggtgaaattgttggattttgatgatcgg
ggaaagattaaattatctatgaaagttgtggatcagaatacaggtaaacctatttcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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