KEGG   Leifsonia xyli subsp. cynodontis DSM 46306: O159_24900
Entry
O159_24900        CDS       T02852                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
lxy  Leifsonia xyli subsp. cynodontis DSM 46306
Pathway
lxy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lxy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    O159_24900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lxy03019]
    O159_24900
   03400 DNA repair and recombination proteins [BR:lxy03400]
    O159_24900
Enzymes [BR:lxy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     O159_24900
Messenger RNA biogenesis [BR:lxy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     O159_24900
DNA repair and recombination proteins [BR:lxy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      O159_24900
SSDB
Motif
Pfam: RQC DEAD HRDC RecQ_Zn_bind Helicase_C
Other DBs
NCBI-GeneID: 17049331
NCBI-ProteinID: AGW42426
UniProt: U3P9D4
Position
complement(2330230..2332236)
AA seq 668 aa
MSWNTWVPDDRDAPPLDEEPPLPAAQDPYAGEDPYAREDPYDGIPFGNAAPAAPAARTAA
VPAPARFATPAEALRRVFGYDSFRGDQAAIIDRVAAGGDAVVLMPTGGGKSLCYQIPSLV
REGTGIVVSPLIALMQDQVDALTAVGVRAAFLNSTQDSAQRSAVERAYLAGELDILYIAP
ERLSSEPTKRFLERGRIALFAIDEAHCVSQWGHDFRPDYLALSELAERWPGVPRIALTAT
ATEATHREITQRLGLERAEHFVSDFDRPNIQYRIVPKAEVRKQLLDFISAVYPGEAGIVY
ALSRTSVERTAEFLAARGLTALPYHAGLDARTRARTQARFLREDGVIVVATIAFGMGIDK
PDVRFVAHIDLPKSVEGYYQETGRAGRDGQPSTAWLAYGLQDVVQQRRMIDDSPGDLAHR
RRLTQHLDAMLALCETVQCRRVNLLGYFGQRSDPCGNCDTCLVPPETWDGTVPAQKLLST
VVRLQRERNQRFGAGHLIDILRGKRTARVDQYGHDRLATWGIGADLSEGQWRGVVRQLIA
LELLKPEGEYGVLAITPESAAVLAGGREVVLRREPDRPERAVRGPRAAAPSELPPADQPL
FEALRAWRTGEAKAQGVPAYIVFGDATLRAVAAARPGSLGDLDGITGIGAKKREAYGQAL
LDVVAAGE
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgagctggaacacctgggtcccggacgaccgggacgcgcccccgctggacgaggagccg
cctctccccgccgcccaggacccgtacgcaggcgaggacccgtacgcccgtgaggacccg
tacgacgggattcccttcggaaacgccgcgcccgccgcgcccgccgcccggaccgctgcc
gtccccgcgcccgcccgtttcgcgaccccggccgaggcgctgcggcgtgttttcggctac
gactccttccgcggcgaccaggcggcgatcatcgaccgcgtggcggcgggcggcgatgcc
gtcgtgctcatgccgaccggcggcgggaagtcgctctgctaccagatcccgtctctcgtg
cgcgagggcaccggcatcgtcgtctccccgctcatcgccctgatgcaggatcaggtggat
gcgctgaccgcggtcggcgtccgggccgcgttcctcaactcgacgcaggactccgcccag
cgctcggcggtcgagcgcgcgtacctggcgggcgaactcgacatcctgtacatcgccccc
gaacggctctcctcggagccgacgaagcggttcctcgaacgtggtcgcatcgccctgttc
gcgatcgacgaggcgcactgcgtctcgcagtggggacacgatttccgtcccgactacctc
gcgctctccgagctggccgagcgctggccgggagtcccgcgcatcgccctcaccgccacg
gcgaccgaggcgacgcatcgggagatcacgcagcggctcggtctggagcgggccgagcac
ttcgtctccgacttcgaccggcccaacatccagtaccgcatcgtcccgaaggccgaggtg
cgcaagcagctgctcgacttcatttcggcggtgtacccgggcgaggcgggcatcgtctac
gcgctctcgcgcacctccgtcgagcgcaccgccgagttcctcgccgcccgcgggctgacg
gcgctgccctatcacgcggggctcgatgcgcggacccgcgcgcggacccaggcgcgcttc
ctccgcgaggacggcgtgatcgtcgtggcgaccatcgcgttcgggatgggcatcgacaag
cccgatgtccgcttcgttgcgcacatcgacctccccaaatccgtcgagggctactaccag
gagaccggccgcgccgggagggacggccagccctcgaccgcgtggctcgcctacggcctg
caggatgtcgtgcagcagcgccgcatgatcgacgactccccgggcgacctcgcccaccgt
cgccgcctcacgcagcacctggacgccatgctcgcgctctgcgagaccgtgcagtgccgc
cgcgtgaacctgctcggctacttcggccagcgctccgatccctgcggcaactgcgacacc
tgcctcgttcctccggagacctgggacggcacggttcccgcccagaagctgctctccacg
gtcgtccggctgcagcgggagcgcaatcagcgcttcggcgccgggcacctgatcgacatc
ctgcgcggcaagcggacggcgcgtgtcgatcagtacggccatgaccgcctggccacctgg
ggcatcggcgcagacctgagcgaaggccagtggcgcggtgtggtacggcagctgatcgcg
ctcgaactgctgaagcccgagggcgagtacggtgtgctggcgatcaccccggagagcgcc
gccgtgctggcgggcggccgcgaggtggtgctgcgacgtgagccggaccggccggagcgc
gcggtccgcggtccgcgcgccgctgcgccgagcgagctgccgcccgcggatcagcccctg
ttcgaggcgctccgggcgtggcggacgggggaggcgaaggcgcagggggtcccggcctac
atcgtcttcggagacgccaccctccgcgccgtcgccgcggcccgtcccggaagcctcggc
gacctggacggcattaccggaatcggcgcgaagaagcgggaagcctacgggcaggctctg
ctggacgtggtggccgcgggcgagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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