KEGG   Martelella sp. AD-3: AZF01_05835
Entry
AZF01_05835       CDS       T04332                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
maad  Martelella sp. AD-3
Pathway
maad03030  DNA replication
maad03410  Base excision repair
maad03420  Nucleotide excision repair
maad03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:maad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AZF01_05835
   03410 Base excision repair
    AZF01_05835
   03420 Nucleotide excision repair
    AZF01_05835
   03430 Mismatch repair
    AZF01_05835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:maad03032]
    AZF01_05835
   03400 DNA repair and recombination proteins [BR:maad03400]
    AZF01_05835
Enzymes [BR:maad01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AZF01_05835
DNA replication proteins [BR:maad03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AZF01_05835
DNA repair and recombination proteins [BR:maad03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AZF01_05835
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AZF01_05835
   MMR (mismatch excision repair)
    DNA ligase
     AZF01_05835
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AZF01_05835
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 RUBY_RBDX
Other DBs
NCBI-ProteinID: AMM86666
UniProt: A0A127CPA9
Position
1265019..1267172
AA seq 717 aa
MANDKVPTEKLTREEAAAELAFLAEEIARHDAAYHGKDAPEITDAEYDALKHRNDEIEAR
FPDLVREDSPSARVGSAPSEVFAPVTHSVPMLSLGNVFSDEDVQDFIASVYRFLGQLPDG
SIAFTAEPKIDGLSMSLRYENGRLVSGATRGDGTTGENVTANVRTIGEIPNRLPDGAPEI
VEVRGEIYMAKSDFAALNAALSEAGEKTYVNPRNTASGSLRQLDPKVTEKRKLKFFAYAW
GEMSEMPADTQMGMVGTFEKWGFPVNPLMKRLTSVDDLLAHYHEIGVKRGDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAITRLIAIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIAGKGSNGEPIREGRDIRVGDYVIVQRAGDVIPQIVDILPEKRPE
DATPYEFPDHCPVCGAHAVRDINEKSGKVDAVRRCTAGFSCRAQAVEHLKHFVSRNAFDI
EGLGSKQVDFFFEHDDPGLAIRTAPDIFTLERRQAEALTKLENFNGWGKTSVANLYQSIN
ERREIALPRFIFALGIRHVGETTAKLLARSYGSYAAFERAMRDAAAGEGDAWDDLNNIDG
IGTVVARALVDFFAEEQNVAVIARLLKEVTPLDDAQRIDTTSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVSGSVSKKTDIVVAGPGAGSKLKKAEELGVQTMDEDEWLALIGG
NT seq 2154 nt   +upstreamnt  +downstreamnt
atggcgaatgacaaggttccgaccgagaagctgacccgggaagaggccgcggccgaactc
gcttttctggcggaggaaattgcccgccatgacgctgcctatcacggcaaggacgcgccc
gagatcacggacgccgaatatgacgcgctgaaacatcgcaatgatgaaatcgaggcgcgc
tttcccgatctcgtgcgtgaagacagcccctcggcccgcgtcggctccgcgccctcggag
gtcttcgcgcctgtcacccattccgtgccgatgctgtcgctcggcaacgtgttttccgac
gaggacgtgcaggacttcatcgcctcggtctatcgctttctcggccagttgccggacggc
tcgatcgcctttaccgccgagccgaagatcgacggtctgtcgatgtcgctgcgctatgag
aacggcaggctcgtctccggcgcgacgcgcggcgacggcaccacgggcgagaatgtgacg
gccaatgtccgtaccatcggcgaaattccaaaccgcctgccggacggcgcgccggagatt
gtcgaggtgcgcggcgagatatacatggcgaaaagcgattttgccgcgttgaacgcggcg
ctctccgaggcgggcgagaagacctatgtgaacccgcgcaacacggcgtccggttcgctg
cgccagcttgacccgaaggtgacggaaaagcgcaagctcaaattcttcgcctatgcctgg
ggcgagatgtcggagatgccggccgacacccagatgggcatggtcgggaccttcgagaaa
tggggtttcccggtcaacccgctgatgaagcggctcacctccgtcgatgacctgctggcg
cactatcacgagatcggcgtcaagcgcggggacctcgattatgatatcgacggcgtggtc
tacaaggtcgaccggctcgacctgcaggcgcggctcggtttccgctcgcgttcgccgcgc
tgggcgacggcgcataaattccccgccgagcaggcgatcacgcgactcatcgccatcgac
atccaggtcggccgcaccggcgcgctgacgccggtggccaggcttgagccgatcaccgtc
ggcggcgtcgtcgtcaccaatgcgacgctccacaacgaggactatatcgccggcaagggc
tcgaacggcgagccgatccgcgaggggcgcgatatccgcgtcggcgattacgtgatcgtc
cagcgcgccggcgacgtcatcccgcagatcgttgacatcctgccggaaaagcggccggag
gatgcgacgccttacgaattcccggatcactgcccggtttgcggcgcccatgcggtgcgc
gacatcaacgagaagagcggcaaggtggacgccgtgcgccgctgcacggccggtttttcc
tgccgggcgcaggccgtcgagcatctgaagcatttcgtttcgcgcaacgccttcgatatc
gaggggctcggcagcaagcaggtcgatttcttcttcgagcatgacgatccggggcttgcg
atccgcaccgcgcccgacatcttcacgctcgaaagacgtcaggccgaggcgctgacgaaa
ctcgagaatttcaacggatggggcaagacctcggtcgccaacctgtaccagtcgatcaat
gaacgccgcgaaatcgcgctgccgcgcttcatcttcgcgctcggcatccgccatgtcggc
gagacgaccgcgaagcttctggcccgctcctatggctcctatgccgctttcgaacgggcg
atgcgggatgcggcggcaggcgagggcgacgcctgggacgatctcaacaatatcgacggc
atcggaacggtcgtcgcccgcgcgcttgtcgatttcttcgccgaagagcagaatgtcgcc
gtcattgcccggctgctgaaggaagtgacgccgcttgacgatgcgcagaggattgacacg
accagtcccgtcgccggcaagacggtggtgtttaccggcagcctcgagaagatgacccgt
gacgaggccaaggcgaaagccgaaagcctcggggccaaggtttccgggtcggtttccaag
aagacggacatcgtcgtcgccggtcccggcgctggctcgaagctgaaaaaggcggaggaa
ctcggggttcagaccatggatgaggacgagtggctggcgctgatcggcgggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system