KEGG   Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300: MMASJCM_3088
Entry
MMASJCM_3088      CDS       T03694                                 
Name
(GenBank) Zn-dependent hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
mabl  Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
Pathway
mabl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mabl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MMASJCM_3088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mabl03019]
    MMASJCM_3088
Messenger RNA biogenesis [BR:mabl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MMASJCM_3088
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B_2 Lactamase_B Lactamase_B_6
Other DBs
NCBI-ProteinID: BAP97864
Position
complement(3096327..3097955)
AA seq 542 aa
MTALGGISEIGRNMTVFELRGRLLIIDCGVLFPGHNEPGVDLILPDIRHIEQRLEDVEAL
VLTHAHEDHIGAIPFLLKMRPDIPVVGSAFTLALVEAKCREHRITPRFIRVTEGERSTHG
PFECEYFAVNHSIPDALAIAVHTEAGTILHTGDIKLDPLPPDRRPTDLPGLSGLGDRGVD
LFLVDSTNSEVPGVGPSESEIAPTLNRLIETARGRVIVACFASNVARVQQIIDASVAHGR
RVALVGRSMVRNMGIARELGFLEVDDRDLINVEAANELAPQRVVLITTGTQGEPMAALSR
MARGDHRQITLTPDDLVILSSSLVPGNEEAVYGIIDSLAKVGTRVVTNTHARVHVSGHAY
AGELLYLYNAVRPRNVMPVHGTWRHLRANAGLAAKTGVDEDRIVLAENGVSVDLHNERAR
ISGRVPVGKMFVHGLVDGDVSDATVGERLVLGNGGFVAVTVVVRSSGRPVGRPQLFSRGF
SDDAKALDPVTELVIAELNSLAEQSVNGTGRIAQSVRRVVGKWVGETYRRQPMIVPTVLT
VD
NT seq 1629 nt   +upstreamnt  +downstreamnt
gtgacagcgctcggcggtatcagcgagatcgggcgcaatatgacggttttcgagctccgt
ggacgcctactcatcatcgactgcggagtgctgttccccggccacaacgaaccgggtgtg
gacctgatcctgcccgatatccgccacatcgagcagcgcctcgaggacgtcgaggcgctg
gtgctcacccatgcgcatgaggaccacatcggggccattccgttcctgctgaagatgcgt
ccggacatcccggtcgtcggctccgcgttcacccttgcactggtcgaggccaagtgccgg
gagcaccgcatcacgccgcggttcatcagggtcaccgagggcgagcggtccacccacggg
ccgttcgaatgcgaatacttcgcggtcaaccactcgatacccgatgcgttggccatcgcc
gtgcacaccgaggccggaaccatactgcacaccggtgatatcaagctcgatccgctgccc
ccggaccggcgtccgacggacttgcccgggctgtccggtctgggggataggggcgtggat
ctgttccttgtggactccaccaactccgaggttcccggtgtggggccgtcggagagcgag
atcgccccgaccctcaaccggcttatcgaaaccgcgcgcggacgggtgatcgtggcctgc
ttcgccagcaacgtggctcgggtacaacagatcatcgacgcctcggttgctcatggccgc
cgggtggcactcgtgggccggtcgatggtgcgcaacatgggcattgcccgtgagctcggc
ttcctagaggttgacgatcgtgacctcatcaatgtcgaggccgcgaatgagcttgcaccg
caacgggttgtactgataaccaccggcacccagggcgagccgatggccgcactgtcgcgg
atggcgcgtggtgatcaccgccagatcacgctgacccctgacgatttggtcatcctgtcg
tcgtcgctggtgcccgggaatgaagaagcggtctacggcatcatcgactccctggccaag
gtgggcactcgggtggtgaccaacacccacgcgcgggttcacgtttccggacatgcgtac
gcgggcgagctgctgtacctctacaacgcggtgcgaccgcgcaacgtgatgccggtgcac
ggcacctggcggcacctgcgcgccaacgccgggctcgcggccaagaccggtgtggacgaa
gaccgcatcgtattggcggagaacggtgtcagcgtggacctgcacaacgagcgcgcacgc
atctctggccgggtaccggtgggcaagatgttcgtgcacggcctcgtcgacggcgacgtc
tccgacgccacggtcggcgagcgtctggtcttgggcaacggcgggtttgtggccgtcact
gtggtggtgcgtagcagtggacgcccggtgggccggccgcagctgttctcgcgcggattc
tccgacgacgcgaaggcgctggatccggtgaccgaattggtgatcgcggaactgaattca
cttgccgaacagtcggtgaatggtaccggccgcattgctcagtccgtgcggcgggtggtg
ggcaagtgggtcggcgagacctatcgccgacagccgatgatcgtgccgacagtgctcacc
gtcgactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

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