KEGG   Magnetospira sp. QH-2: MGMAQ_2764
Entry
MGMAQ_2764        CDS       T03795                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
magq  Magnetospira sp. QH-2
Pathway
magq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:magq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MGMAQ_2764 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:magq03021]
    MGMAQ_2764 (rpoB)
   03400 DNA repair and recombination proteins [BR:magq03400]
    MGMAQ_2764 (rpoB)
Enzymes [BR:magq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MGMAQ_2764 (rpoB)
Transcription machinery [BR:magq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     MGMAQ_2764 (rpoB)
DNA repair and recombination proteins [BR:magq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      MGMAQ_2764 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: CCQ74615
UniProt: W6KAX6
Position
complement(2802740..2806894)
AA seq 1384 aa
MSNSFTGHNRIRKSFGRIPVVAPMPNLIEVQKTSYECFLQRDTPVAERTESGLQEVLKSV
FPINDFSERGTLEFVSYEFEEPKYDVEECQQRGMTYSAPLKVTLRLVVWDVDEETGARSV
RDIKEQDVYMGDMPLMTANGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA
RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPVTTLLLALMADGPAEGENLGEETRRTGGM
SPEQILNFFYDTVSFTKGAKGWKTAFDAKRLAGTKMAFDLVDANTGDVVAEIGKKMTPRL
ARKLTEAGMTEQLISLEELVGRYIAQDLINEETGELFCEAGDELTEEILEILEKAGITEI
PTLAIDHINVGPYIRNTLAIDKNTTREEALIDIYRVMRPGEPPTLDTAENLFGGLFFDSE
RYDLSPVGRVKMNSRLGFETEDTLRTLRSEDILEVVKVLVELKDGKGEIDDIDHLGNRRV
RSVGELMENQYRVGLLRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQ
FMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIN
SLATYARVNQYGFIESPYRKVVDGKVSDDVMYMSAMQEGKFAIAQANTELAEDGSFVQDL
VSVRQAGDYHMAPSTDIDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLI
KAEAPLVGTGMEQAVARDSGASIVAKRSGIVDQIDGTRIVVRATEETSHSAAGVDIYNLL
KFQRSNQNTCINQRPLVKVGDRVTQGEIIADGPSTELGELALGRNVLVAFMPWNGYNFED
SILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNMDEAGIVYIG
AEVKPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVF
SRRGVDKDERALAIERAEIDRLAKDRDDERDILERSFRTRLQALIMGKTVSGGPNGVKAG
DTITDELLAGVEAREWGKIVLDDDNIMADVEALRTHTDESVEVLNKRFENKVEKLQRGDE
LPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPFLEDGTHVDVVLNPL
GVPSRMNVGQILETHLGWACNGIGRQIGDMLDAIKLGLADDEPLREKLADVYGQDVYKQS
IEHLDQPQLIDMSKNLRNGITIATPVFDGAREPDIVKMLEKANLPASGQMDLWDGRTGEK
FDRAVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDTFEAGIPESFNVLVKELHSLGLNVELL
QSEI
NT seq 4155 nt   +upstreamnt  +downstreamnt
atgagtaattccttcaccggtcacaatcgtattcgcaagagctttgggcgcatccccgtg
gtcgccccgatgccgaacctgatcgaggtccaaaagacttcctatgaatgtttcctgcaa
cgcgacacgccggtcgcagagcgcaccgaaagtggtttgcaggaagttttgaagtcggtt
ttcccgatcaatgacttctccgagcgcggcacgctcgagttcgtatcctatgaattcgaa
gagcccaagtacgacgtggaggaatgccagcaacggggcatgacctactcggcgccgctc
aaggtcaccctgcggttggtggtctgggacgtggacgaggaaaccggggcccgctccgtg
cgtgatatcaaggaacaagacgtctatatgggcgacatgcctttgatgaccgccaacggt
accttcgtggtcaacggcaccgagcgcgtgatcgtctcgcagatgcaccgctctccgggc
gtgttcttcgatcacgacaagggcaagacccattcctcgggcaaatatctgtttgccgcc
cgggtgattccctatcgcggttcctggctcgacttcgagtttgatgccaaggatctggtc
tatgtgcgcatcgaccgccgtcgcaagctgcctgtcaccaccttgctgttggccctgatg
gccgatggtccggcggaaggcgagaacctgggcgaagagacccggcgcaccggcggcatg
agccccgagcagattctcaacttcttctacgacacggtctccttcaccaagggcgccaag
ggttggaagaccgcttttgacgccaagcgtttggccggcaccaagatggcctttgacttg
gtggatgccaacaccggcgacgtggttgccgaaatcggtaaaaagatgaccccgcgtctg
gcgcgcaagctgaccgaagcgggcatgacggaacagctgatttccctggaagaactggtc
ggtcgctacattgcacaagacctgatcaacgaggaaaccggcgaactgttctgcgaagcc
ggtgacgaactgaccgaagagatcctggagatcctggaaaaggccggaatcactgaaatc
ccgaccctggccattgatcatatcaatgtgggtccctacatccgcaataccctggccatc
gacaaaaacaccacccgcgaagaggccctgatcgatatctaccgggtcatgcggccgggc
gaaccgccgaccttggatacggcggagaacctgtttggtgggttgttctttgattccgaa
cgttatgacctgtcaccggtaggccgggtgaagatgaactcgcgcctcggctttgaaacc
gaagacaccctacgcaccctgcgcagcgaggatatcctcgaagtggttaaggtgctggtg
gagcttaaggacggcaagggcgagatcgacgacattgatcacctgggcaaccgtcgtgtg
cggtcggtcggcgaactgatggaaaatcagtatcgggtcggtctgctgcgcatggaacgg
gccatcaaggaacgcatgagttccgtcgatattgatacggtgatgccgcacgacctgatc
aatgccaagcccgctgccgccgcggtgcgcgagttcttcggatcgtcgcagcttagccag
ttcatggatcagaccaacccgctgtcggaaatcacccacaaacggcgcctgtcggctctc
ggcccgggcggtctgacccgcgagcgcgccgggttcgaggtgcgtgatgtgcatccgacg
cattatggtcgcatttgtcccattgagacgcctgaaggccccaacatcggcctgattaac
tcgctggccacttatgcccgggtcaatcaatacggcttcatcgaaagcccctaccggaaa
gtggtggacggcaaggtttccgacgacgtcatgtacatgtcggccatgcaagagggcaaa
ttcgccatcgcccaggccaatacggaactggccgaggacggtagctttgtccaagacctg
gtcagcgtgcgtcaggcgggcgattaccacatggcgccttccaccgatatcgacctgatg
gacgtgtcgccgaagcagcttgtgtccgtggccgcggcgctcattccattcttggaaaac
gacgacgccaaccgcgccctgatgggatcgaacatgcagcgtcaggccgtgccgctgatc
aaggccgaagcgccgttggttggtaccggcatggaacaggccgtggctcgagactccggg
gcgtccatcgtcgccaagcgatccggcatcgtcgatcagatcgacggaacccgtatcgtg
gtgcgtgccacggaagaaacctcgcactcggcggcgggcgtcgacatctacaatctgctg
aagttccagcgttccaaccaaaacacctgcatcaaccagcggccgctggtgaaggtcggt
gaccgggtgacccagggcgagattatcgccgatggtccttctaccgagcttggtgaattg
gctttggggcggaacgtgctggtcgcgttcatgccatggaatggttacaacttcgaggat
tccatcctgatctccgagcgcatcgtccgcgacgacgtgttcacctcgatccatatcgag
gaattcgaggtcatggcccgcgatacgaaactgggccaagaggaaatcacccgcgacatt
cccaatgtgggtgaagaagcgctgaagaatatggacgaggcgggcatcgtgtatatcggt
gccgaagtcaagccgggcgatattctggtcggcaaggtgacgcccaaaggcgaatccccg
atgactccggaagaaaagctgctgcgggccatcttcggcgaaaaggcttccgatgtgcgc
gacacgtcgctgcgtttgccaccgggcgtcgccggtaccatcgtcgaggtgcgggtgttc
tcgcgccggggcgtggacaaggacgaacgcgccctggccatcgagcgggccgaaatcgac
cgcttggccaaggatcgggacgatgaacgggatattctggagcgcagcttcagaacccgc
ttgcaggctctgatcatgggtaaaaccgtgagcggcggtcccaatggcgtcaaggccggg
gacaccattaccgacgagttgctggccggtgtggaggcccgcgaatggggtaaaatcgtc
ctcgacgatgacaacatcatggccgatgtggaagccctgcgcacgcacaccgatgagagc
gtcgaagtactcaacaaacgcttcgagaacaaggtcgagaagctacagcgtggtgacgaa
ctgccgccgggcgtgatgaagatggtcaaggtcttcgttgcggtgaagcgcaagctccag
ccgggcgacaagatggcaggacgtcatggcaacaagggtgtgatctccaagatcaatccc
atcgaggacatgcctttcctggaagacggcacccatgtggacgtggtgctcaaccccttg
ggcgtgccatcgcgcatgaacgtggggcagatcctcgaaacccatctgggctgggcctgt
aacggcatcggacgccagattggtgacatgctagacgccatcaagctcggcttggcggac
gacgaaccgctgcgcgagaagttggccgatgtgtacggtcaggacgtctataagcagagc
atcgaacatctggatcagccgcaactgatcgatatgtccaagaatttgcgcaacggcatc
accatcgccacgccggtgtttgatggtgcccgcgagccggacatcgtcaagatgctggaa
aaagccaacctgcccgcatccggacagatggatctgtgggatggccggaccggcgagaag
tttgatcgggcggtgactgtcggctacatctatatgctgaagctgcatcacttggtggat
gacaagatccacgctcggtctatcggcccgtactcgctggtcacccagcagccgctgggc
ggcaaggcccaattcggcggacagcggttcggcgaaatggaggtctgggctttggaagcc
tatggtgccgcctataccctgcaggaaatgctcacggtcaaatcggatgacgtctccggt
cggaccaaggtctatgaggccatcgtccgaggggacgataccttcgaggcgggcatccct
gagtccttcaacgtgttggtcaaggaattgcactcgctcggcttgaacgtcgagcttctg
caaagcgaaatctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (186)   
   KEGG ORTHOLOGY (1)   
   RefGene (183)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (201)   

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