KEGG   Marinobacter sp. CP1: ACP86_20960
Entry
ACP86_20960       CDS       T04052                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
mari  Marinobacter sp. CP1
Pathway
mari03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mari00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACP86_20960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mari03019]
    ACP86_20960
   03400 DNA repair and recombination proteins [BR:mari03400]
    ACP86_20960
Enzymes [BR:mari01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ACP86_20960
Messenger RNA biogenesis [BR:mari03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ACP86_20960
DNA repair and recombination proteins [BR:mari03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      ACP86_20960
SSDB
Motif
Pfam: RQC DEAD HRDC RecQ_Zn_bind Helicase_C ResIII HHH
Other DBs
NCBI-ProteinID: AKV98843
UniProt: A0A0K1UGD1
Position
4562462..4564258
AA seq 598 aa
MLHEVFGYESFRPLQGDIIREVSEGRDALVLMPTGGGKSLCYQVPALVRSGTAIVISPLI
ALMQDQVAALKELGVRAAFLNSTMDFEQARATEYALMTGELDLLYCAPERLIQPRTIELL
HDASISLFAIDEAHCVSQWGHDFRSDYLQLSMLAEQFPGVPRIALTATADERTRKEIAER
LSLTEARHFVSGFDRPNIQYRIAPKINANKQLLDFIKAEHEGDCGIVYCLSRNKVDATAK
TLAQKGYTALPYHAGLSSEQRAHHQERFLREDGVIIVATIAFGMGIDKPDVRFVAHLDLP
KSLEAYYQETGRAGRDGKPSTAWMVYGLQDVIKLRQMLESSQGNDHFKRVERQKLDAMLG
LCEVTSCRRQVLLRYFGDELEQPCGNCDTCLNPPDTWDGTVAVQKALSCVFRTGQRFGVT
YLIDVLRGSENERILQSGHHQVSTYGIGTELSANEWKSVYRQLVANGYLRADPEGYGALQ
LTEQCRPLLKGRQTIELRKDPEIKKTTGRANGGRSGSPVSEQITDKAGWEALRACRKELA
DKQGVPPYVIFHDTTLFGMLERKPRTLDELAEVSGVGAAKLEKYGEIFLQTIAGLEQA
NT seq 1797 nt   +upstreamnt  +downstreamnt
gtgctgcacgaagtctttggttatgaatccttccgtccgcttcagggtgacatcatccgg
gaagtatcggaaggccgcgatgcacttgtgctcatgccgacgggcggcggtaaatctctt
tgctatcaggtgccggcgctggttcgctcgggcactgcgatcgtaatttcacctctgatt
gccctgatgcaggaccaggtagcggcattgaaagagctaggggtccgggctgcgttcctg
aattcaaccatggatttcgagcaggcccgggcgaccgaatacgcgctcatgaccggtgag
cttgaccttctgtactgcgcccctgaaagactgatacagccgcgcaccatcgaattgctt
catgacgcctccatctcgctgttcgctatcgacgaggcccattgtgtgtcccaatggggt
cacgatttccgatccgattaccttcagctcagcatgctggcagaacagtttcccggcgta
ccccgcatcgcgttgaccgcaaccgcggatgagcgaacccgaaaggaaattgcagaacga
ctgtcactgacagaggcaagacacttcgtcagtggcttcgatcgccccaacattcagtac
cgtatagcgccaaaaataaacgcgaacaaacagttactggattttattaaagccgaacat
gagggcgactgcggcatcgtttactgcctgtcccggaacaaggtcgacgccaccgcgaaa
accctggcccagaaaggctataccgctctgccctatcatgcaggcctgtcctcggaacag
cgtgcccatcaccaggagcggttcctgcgtgaagacggggtgattattgttgccaccatc
gccttcggcatgggtatcgataaaccggacgtgcgctttgtcgcacacctagatctgccg
aagagccttgaagcctactatcaggaaaccggtcgggccgggcgtgacggcaagccgtct
acggcctggatggtttatggcctgcaggatgtcatcaaactgcgccagatgctggaaagc
tcacagggtaacgatcatttcaagcgcgtggaacggcagaagctggatgcgatgctgggc
ctttgtgaggtcaccagttgccgccgtcaggtgctgttgcgctatttcggggacgagctt
gagcaaccctgtggcaattgcgacacctgcctgaatccaccggacacctgggatggaacc
gtcgccgtccagaaagccctttcctgcgttttccgaacgggccagcgtttcggcgttacc
tatctgattgatgttctgcgaggctcggaaaacgagcggattctccaatccgggcaccac
caggtgtcaacctacggcattggaacggaactgagtgccaacgagtggaaatcggtatac
cggcaactggtggccaatggttacctccgtgcagatccggagggctatggtgcgctccag
ttgaccgaacagtgtcggccactgctgaaaggacgtcagaccattgagctgcgcaaggat
ccggaaatcaagaagacaaccggccgggcaaacggcggccggtcgggttcgccggtctca
gaacagattaccgacaaggccggctgggaggcgcttcgagcctgccgcaaggagctggcc
gacaaacagggcgtgccgccttacgtcattttccatgacactaccctgtttggaatgctg
gaacgcaaaccgcgcaccctggatgagctggcggaagtcagcggcgtgggcgccgccaag
ctagagaaatacggcgagattttcctgcaaaccatcgctggcctcgaacaggcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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