KEGG   Drepanopeziza brunnea: MBM_06439
Entry
MBM_06439         CDS       T03105                                 
Name
(RefSeq) putative PAB-dependent poly(A)-specific ribonuclease subunit PAN2
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
mbe  Drepanopeziza brunnea
Pathway
mbe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MBM_06439
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbe03019]
    MBM_06439
Enzymes [BR:mbe01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     MBM_06439
Messenger RNA biogenesis [BR:mbe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MBM_06439
  mRNA degradation factors
   3'-5' decay
    Pan complex
     MBM_06439
SSDB
Motif
Pfam: UCH_1 PAN2_N RNase_T
Other DBs
NCBI-GeneID: 18762374
NCBI-ProteinID: XP_007294328
UniProt: K1X3F0
Position
Unknown
AA seq 1115 aa
MDGEWEEVGRLLLPPPGPQAPSTPVSTFAFDNSQELLWAGNQFGGVSSFYGVELARYTSF
KCGDGPVHQFLFHEKGVIALGPKSVHMAMRRGPPIWHVTYESQYQFAENKADTYLHSHNE
MKDLRCMSYTNKGNLEILVAGLQDHMFVIDVEKGTIVKQLPTTDKYTIMRRSRYICAATQ
KGTINIIDPADFRIVKVWNAHSSLIHDMDAQNDYIVCCGYQIRQGQPYILDVMVNVFDLK
HMAASSPVPFPAGAAYLRMHPRMSTTVIVVSQHGQMHIVDLMNPNSSYIKQLNTMAFISK
IEIAPSGEALVIADTECHIHLWGSPSRMRFGDVSNPIELADATEAPPEVDWSSNTPLSSV
GMPYYREQLLSNWPSHLIFEVGAPPPKSDQLFLSTLKCTDWGMYGRNNRATKRYQVENTR
EIEKTPSSLQAPKFLSEKARETSTDGSGERRPSDSSSTSDVIGATELLSMKADVPVWYEN
VEIRYSKFGVDDFDFGQVLKSERRLADCSNQTPARPLGLLEEDAPGSSLTTMLQGLNRFL
LDRITQDWKAIVPHNHIFDQVQLSIYMILVPANCLRQILTTSATSGIRCIHCQGEHTRPG
ATFVNELLYPLSKPMMRNARPQRPSFSQILKSSIERDSTSRGWCSRCQRYQSLATKKTVH
SVPAVLMLNAAVNSPEAKQLWAIPGWLPEEIGIIIDPQGQLFCYQGDDLKLHIQRGIHSI
AVYSLVGVATEITSGLNQKPHLVSLVNVAHSLPKRPEKSQWHLFNDFLVRPITAAEALTF
NTTWKLPSVITYQMKAYNNKIDDGWKQNLDTQLLYMDSNPNSVKTYRPLAFPQEAPTEGT
IIALDTEFVSVRRPEIEVNAKGDRTTVRPTVHALARVSVVRCSGEDEGLPFIDDYIHIRD
TVVDYLTEYSGISQGDLDVGVSKHNLVALKVVYKKLWILLNLGCKFLGHGLKQDFRVLNV
HIPKSKVIDTIDLFYSTSNRRLLSLSFLASYLLKEDIQIGTHDSIEDARTALKLFKKYLE
FQDAGILELMIDDIYKDGRLMGFKAPAAKKDGHLIERTETPELTPEGGGLVAPASDPTTP
VKKPVGLTPGSSSSAFSAGWTPGKGSSGMGGSPFK
NT seq 3348 nt   +upstreamnt  +downstreamnt
atggatggcgaatgggaggaagtcgggcgcctgctccttccgcctcctgggcctcaagcg
ccctcgacacccgtgtcaacattcgcattcgacaactcgcaggaattgctctgggctggg
aaccagtttgggggcgtctcgagcttttacggagtagaactcgcaagatacacttccttc
aaatgcggagatggcccggtccaccagtttctgttccatgaaaagggggtcatcgctctg
ggaccgaagagtgtgcatatggcaatgcgacggggtcctccaatttggcatgtcacgtat
gaaagtcaataccagtttgccgagaacaaggctgatacatatttgcatagtcacaatgaa
atgaaagatcttcgatgcatgagttatacgaataagggaaatctagagattctggtggct
ggattgcaagaccatatgtttgtcatagacgtggaaaagggtaccatcgtgaaacagcta
cctacgactgataaatacaccattatgaggcgaagccgctacatttgtgcagctacccag
aaaggtaccatcaatatcattgacccagccgacttccgcatcgtcaaagtctggaacgcc
cactcctcactcatccatgacatggacgcacagaatgactacatagtctgttgcggatac
cagattcgacaaggacagccatatatcttggatgtcatggtcaacgtttttgacttgaag
cacatggctgcatcgagtcctgtgccgtttcctgctggggcagcatatttacgaatgcac
ccgcgcatgtcaacaacagtaattgtagtctcccagcatggccaaatgcacatagtcgac
ctgatgaacccaaactcgagttatatcaagcaactaaatactatggctttcatcagcaag
attgaaattgcaccctctggagaggcattggtgattgctgatactgaatgccacatccac
ttgtggggatcgccttctaggatgcgttttggggatgttagcaatccgatcgaacttgcc
gacgcaaccgaagccccccctgaagtagattggagctcaaatacccccctaagtagtgtc
gggatgccttactatcgcgagcaattgctatcgaattggcccagccacttaatctttgag
gttggagctccacctccaaaatcagaccagctatttctatccaccttgaaatgcactgac
tggggtatgtatggacgaaacaaccgagctaccaagagataccaggttgagaataccaga
gaaatcgagaaaacgccttccagtttgcaagctcccaaattcctaagtgaaaaggctcgt
gagacttccactgatggttccggggaacgaagacctagtgactcttccagcacctcagat
gtgattggagccactgagctgttgagcatgaaggcagatgttcccgtatggtacgagaac
gtggaaatcagatatagcaaatttggagtggatgacttcgacttcgggcaagttctgaag
tccgaaagacgcttggccgattgctctaaccaaactccagctagacctcttggtttactt
gaagaggatgccccaggatcctctctaacaacaatgttgcaaggactaaatcgtttcttg
ctggacagaatcactcaggactggaaggcgatcgtcccacataaccacatatttgatcaa
gtacaactatccatttatatgattttggtccctgctaattgtcttcgccagatcttgact
acctccgcaacatctggaattcgttgcatccattgccaaggcgagcatactagacctgga
gcaacatttgtcaatgagcttctgtacccgctatccaagccaatgatgcggaatgcgaga
ccccaaagaccgtctttctctcagattctcaagtcaagtattgaacgtgattcgacgagc
cgaggctggtgcagtcgctgccagcgctaccagtccctagcaacgaagaagaccgttcat
agtgtgcctgctgtcctcatgctcaatgccgcagtcaatagccccgaggccaaacaactt
tgggctataccggggtggttacctgaagaaatcggcattattattgacccacagggacaa
ttattctgctaccaaggagatgatttaaagctccacattcagcgcgggatacatagtatt
gccgtgtactctctggttggagttgccaccgaaattaccagtggcctcaaccaaaaacca
catcttgtctcgctggtaaacgtggcacattccctccccaaaagaccagaaaagagccaa
tggcatctcttcaacgacttcctcgtccggcctattacggcagcggaagccctcactttc
aatacaacctggaaactgccttctgtgatcacatatcagatgaaggcatacaacaacaag
attgatgatggctggaagcaaaatctagatacacagttactctacatggattccaaccct
aattcagtaaaaacatatcggcctcttgcgttcccacaggaagccccgactgaggggacg
ataatcgcactcgatacagaatttgtatctgtgaggcggccagagatagaagtaaacgcc
aagggtgaccggacaaccgtgagaccgacagttcacgcacttgcccgagtctccgtagtc
agatgttccggagaggacgagggtctccctttcatcgacgactacatccatatccgagat
accgtcgtcgactacctgaccgagtactccggcatcagtcaaggcgacctcgacgtcggc
gtctccaaacataacctcgtggcactaaaagttgtctacaagaaactctggatcctgctg
aacctcggctgcaagtttctaggtcacggcctcaaacaggatttccgcgttctcaatgtg
cacatcccgaagagcaaagtcatcgacacaatcgacctcttttacagcacctccaaccgc
cgcctgctctccctctccttcctcgcctcgtacctgctcaaggaagacatccagatcggc
acgcacgatagtatcgaagacgcgcggacggcgctgaagctcttcaagaagtacctggag
ttccaagacgcggggatcctggagctcatgattgacgacatctacaaggacggcaggctc
atggggttcaaggcgcccgccgccaagaaggatggccatctcatcgagaggacggagacg
ccggagttgacgcccgagggaggcggacttgttgcgcctgcgtcggaccctacgacgcca
gtaaagaagccggttggtctcacgcctgggtcaagcagttcggccttcagcgccggctgg
acgcctggaaaagggtcgtcggggatggggggatccccgttcaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (55)   

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