KEGG   Monosiga brevicollis: MONBRDRAFT_34427
Entry
MONBRDRAFT_34427  CDS       T01042                                 
Name
(RefSeq) hypothetical protein
  KO
K11600  exosome complex component RRP41
Organism
mbr  Monosiga brevicollis
Pathway
mbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MONBRDRAFT_34427
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbr03019]
    MONBRDRAFT_34427
Messenger RNA biogenesis [BR:mbr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MONBRDRAFT_34427
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MONBRDRAFT_34427
SSDB
Motif
Pfam: PDEase_I RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 5895412
NCBI-ProteinID: XP_001750186
JGI: 34427
UniProt: A9VBQ1
AA seq 1336 aa
MSFKAWYGDETACCLLGASCCLPARLVLLPARRVEGDDELRSVKAKLGVFEQADGSAYVE
QGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYASFSTDQRRARSRLDRKLAEQGTRI
ARTLESVVMGQLLSRSTINLNVQVLQADGGVLATAINAASLAMMDAGVPMKDFLCACNAG
VLEGVAVLDTNHSEALARGPDLTVAVMPRTNTIVLNQDEKRQTNFELTMALKLLYHLGVE
FVCSVLSLPLALSLSRCALSLGHPILEYCQHALTHSLHPQPHSLSLSLSVFLLLSVTTNL
SLCVLCLCCLCVSVSLSVSLCLSVSHTHTHTLSLSLSLCLALGRMPLPHASTIPLGAGRA
GNMNPPLEMPESSFQGSALDQLRSMPDSGFQGSVMDQLRSGADPMDWMTESFSDAESDTS
EVSFGDPSVQILESTTSPFAPVIGLLQSILDEHPLEPVDIFESRLPFAERQIPSEEDSTP
TRLKWCIDYLKQQNIARTAHNEVNRILQSKLDRSGMDESMKRWVESYSDADNRRRRSIRR
RLSPMRRSSGSRLSVDSIKSRSASEAMLVRRLSATMGNPSRGMAMDIDFSQSADPSLFSA
LRQRRRMSQITEEDEVSWSQQPSAATSESTLELLALTPRMTTTEPRSSQPSSQPSSPHLL
HTESSGRNSDPAIFTFRRGNEDGATRERHNSIDAKSGTGIVLAREVITSARASMATTLST
GTAVSTEAVSPSNTSMVVPTANDRTQSGSPRTSPLLMRGQTVDDGSKAPLTSQSSEKTLI
ENGVAEANGEGAAPASNIGSNRGSLRQLRPSIALTHTNSTDEDDMLRVARKSSSLPPNIP
AMASDLSVTRSLATRPMRLQGNTTRVVRSFSTRSSRAVLENPLVDFDDKCLDFLDGIRDW
GLDIFKFESVAAHRPLVGIAMQVLSERNLFDNLGLDKSTAARFFARLEDGYGRYPDVLYH
NNLHAADVTHSTFLLMEAPIVRNCLNDLEVLAAVIAAAGHDVGHFGFNNTFLAATSAPLA
ILYNDQSILENHHAATSFKLMQEEGCNLLANLEADLRTTARSLVIDMILATDMAKHFTFL
AEFRSFVERINNTSCRDLTDLSDEDRQLLLQAIVHCADLAGPTKPFAISKVWAERIVNEL
FRQGDRERELQLEVGPINDRDKTNLPTSQIGFIDFIVMPLWTTWYELVGEEPDQSPIENI
TANRATWQELKDKDERTSPLARRRTGRRRPKRLKSASHRSGSRAQSAEDPDLDASTSFSQ
RESYIDDASQRASVISDLEDNVTGEVVREVATEVAATLTSKTGPATPAHARRVLNTDQAK
STPSSPYGDSTSVSVV
NT seq 4011 nt   +upstreamnt  +downstreamnt
atgagcttcaaagcatggtacggcgacgagactgcctgctgcctgctcggcgcgtcttgc
tgcctgcctgctcggctcgtcttgctgccggctcggcgcgtcgagggagatgacgagctg
cgcagcgtcaaggccaagctcggcgtgtttgagcaggccgacggctcggcgtatgtggag
cagggcaataccaaagtgctggccattatcaatggacctcatgacagcgatgcgcgtggt
cccaatgccagtgggcatctgaccgtcagctgcgagtttatttacgccagctttagtaca
gatcaacgccgcgcgcgaagtcgtctcgaccgaaagctagcagagcagggcacgcgaatt
gcacgaacgctcgagtcggtggtcatgggtcaattgctgtcgcgatcaacgatcaatctg
aacgtgcaggtgttgcaagctgacgggggagttttggcgactgccatcaacgcagctagt
ctggccatgatggacgcaggcgtgccgatgaaggattttctgtgtgcatgcaatgccggt
gttttggagggtgtggccgtgcttgacaccaatcattctgaagcattggctcgtggacct
gatcttaccgtggccgtaatgccacgcaccaataccatcgtcttgaatcaggatgaaaaa
cgtcagacaaactttgaattgaccatggccctaaaacttttgtatcatcttggggtcgag
tttgtttgcagtgtgctctccctgcctctcgctctctctctctcgcgctgtgctctctct
ctcggccacccaattcttgagtattgccaacacgcacttacacactctctgcatccccaa
ccccattctctctctctctctctgtctgtgtttctcttgttgtccgtgacgaccaatctc
tctctctgtgtcctctgtctctgttgtctctgtgtctctgtctctctctctgtctctctc
tgtctctctgtctctcacacacacacacacactctctctctgtctctctctctctgtctc
gcgctcgggcgtatgccgttgccccacgcatcaaccatcccccttggggcgggccgcgcc
ggtaacatgaatcctccattggaaatgcccgaatcgagttttcaaggctcagcgctggac
cagctccgcagtatgccagactcgggctttcaaggctcagtgatggaccaactccgctct
ggtgctgaccccatggactggatgaccgagagcttttctgatgccgagtcggatacctca
gaagtcagctttggcgaccccagcgttcagattctcgagagcaccacctctccatttgct
ccggtcattggtctgcttcagtccattctcgatgaacatccgctcgagccagtcgacatc
ttcgaaagcagattgccattcgccgagcgacaaatcccttccgaagaggattcaaccccg
acacgcctcaagtggtgcattgactatctcaagcagcaaaacattgcccgcacagcacac
aatgaggtgaaccggatcctgcagtcgaagcttgatcgttccggcatggacgagagcatg
aagcgctgggttgaaagttactcagacgctgacaatcgccggcgtcgctccattcgccgg
cgcctttctcccatgcgccgatcttcaggcagccgtctgtcagtggatagtataaagtcc
cgtagtgctagcgaagccatgctcgtgcgtcggctgtcagccaccatgggcaatccatcc
cggggtatggcgatggacatcgacttttcccagtcggctgacccttcccttttcagcgct
ctgcgccagcgtcgacgcatgtcccagatcacggaagaagatgaggtctcttggtcacaa
caacccagtgctgctacatccgagtcgacgttggagttactggccctgacaccgcgcatg
acgacaaccgagccgcgttcctcccagccctcttcacagccgtcgtcaccccacctgttg
cacaccgagtcctctggccgcaacagcgatccagccatcttcacgtttcgccgtggcaac
gaggatggtgctactcgtgagcgccacaatagcatcgacgccaagtcgggtaccgggatc
gttctggctcgcgaggtgatcacttctgcacgcgccagcatggccacgaccttgagcacc
ggtactgccgtctcgaccgaggctgtttcgcccagcaacaccagcatggtggtcccgact
gccaacgatcgcactcaaagcggttctccacgtacctcaccccttctcatgcgaggccag
accgttgacgatggtagcaaagctccgctgacctcccaatcttctgaaaagacactcatc
gaaaacggcgtcgccgaagccaacggcgagggcgccgctcccgctagcaatattggtagc
aatcggggctccttgcgccagcttcggcccagcattgccctgactcacaccaactcgact
gacgaggatgacatgcttcgagtggcgcgaaaaagctcttcattgccgccaaatattcct
gccatggcatctgatctcagtgttactcgctcgttggctacgcgtcccatgcgtcttcaa
ggcaataccacccgcgttgtgcgctccttttccacgcgcagcagccgggccgttcttgaa
aacccgttggtggactttgatgacaagtgcttggactttctcgatggcatccgcgattgg
ggtctggacattttcaaatttgaaagcgtggcggcccaccgaccactcgttgggattgcc
atgcaagttctatctgagcgcaatcttttcgacaatcttggactcgataagagcacggcg
gcacgcttctttgcgcgcctcgaggatggctacggacgatatcctgacgttctctaccac
aacaatctgcatgccgctgacgtcacgcacagcaccttcctgctcatggaagcgcccatt
gtgcgcaattgtctcaacgatctcgaagtccttgctgccgtcatcgctgcggctggacac
gacgtgggtcactttgggttcaacaatacgtttctggcagccacctccgcccccttggcc
attctgtacaacgatcagtcaattctggagaaccatcatgcagcaacctctttcaagctc
atgcaggaagaaggatgcaatttgctggccaacctcgaggcggacctgcgaacaaccgcg
cgtagcttggtgattgatatgatcctcgcgacggatatggccaaacactttaccttcctt
gcggagttccgctccttcgttgagcgcatcaacaacaccagctgccgtgacctcacggat
cttagcgatgaggaccgtcagctgttgctccaagccattgttcattgcgctgatctggct
ggtcccaccaagccgtttgccatctccaaggtttgggccgagcgcattgtcaacgagctc
ttccgtcagggcgatcgagagcgcgagctgcagctggaagttgggcccatcaacgaccgc
gacaaaaccaatcttccaacctcccaaattggctttatagactttatcgtaatgccgctc
tggaccacttggtatgagctggtcggcgaggagcctgatcagagtccaatcgagaatatc
acggccaatcgtgccacctggcaggagctgaaagacaaggacgagcgaacttctcctttg
gcgcgacgccgcacaggtcgtcgcaggccaaagcggctgaaatctgcctcccatcgcagc
gggtctcgcgctcaatcggccgaggatcccgatctggatgcctctactagttttagccag
cgcgagtcatatattgacgatgccagccaacgtgcctcggtcatcagtgacttggaggac
aacgtcactggtgaggttgtacgcgaggtggcgacagaggtggctgcaacgctgacctct
aaaacagggcctgccactccggctcacgcgcggcgcgtgttgaacacggatcaagccaag
tccacgccgagctctccctacggcgattcgaccagtgtctcagtcgtttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (251)   
   KEGG ORTHOLOGY (1)   
   RefGene (246)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (261)   

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