KEGG   Momordica charantia (bitter melon): 111010804
Entry
111010804         CDS       T05045                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
  KO
K13117  ATP-dependent RNA helicase DDX35 [EC:5.6.2.6]
Organism
mcha  Momordica charantia (bitter melon)
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mcha03041]
    111010804
Enzymes [BR:mcha01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111010804
Spliceosome [BR:mcha03041]
 Complex C
  Other components
   Complex C specific factors
    111010804
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C AAA_22 HA2_N AAA_19 DEAD AAA_30 AAA_7 SRP54 nSTAND3 T2SSE AAA_23 AAA_11 AAA_29
Other DBs
NCBI-GeneID: 111010804
NCBI-ProteinID: XP_022140054
UniProt: A0A6J1CE11
Position
Unknown
AA seq 695 aa
MAQFWKPGTEKPRLLDDGEGGVLFFSSSYSSSSGFGFSSIEKQRQRLPVYKYRTAILYLV
ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK
LGEEVGYTIRFEDLTNTDVTRVKFLTDGVLLREMMDDPLLTKYSVIMVDEAXERSISTDM
LLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQPSKRRHRFEGEALEPKVEPAILSVEG
RGFNVQIFYLEEPVSNYVQSTVSTVLSIHEQEPPGDILVFLTGQGDIDSAIQLLREEERN
DRKKSELIVLPLYSGLSRAEQELVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS
KQRFYNPISDIESLIIAPISKASARQRTGRAGRIRPGKCYRLYTEEYFINDMPAEGIPEM
QRSNLVSSVIQLKALGIDNILGFDWPSPPSPEVMVRALEVLYSLGVLDDDAKLTSPVGFQ
VAEIPLEPMISKMILASGELGCSEEIITIAAVLSIQSIWTSSRGAQKELDEARLRFAAAE
GDHVTFLNVYKGFLQSNKSSQWCHKNFINYQAMKKVIEVREQLRRIAQRLGIVLKSCERD
TMAVRKAVTAGFFANASHLEAYSHNGMYKTTRGSQEVYIHPSSVLFRVNPKWVIYHSLVS
TDRQYMRNVITIDPGWLTEAAPHFYQYRQLSHMPH
NT seq 2088 nt   +upstreamnt  +downstreamnt
atggcgcaattttggaaaccgggcactgagaagccccgcttgctcgacgatggagagggt
ggcgtgcttttcttctcttcttcttactcttcttcatcgggatttgggttctcgagcatt
gagaagcagaggcagaggcttcctgtttataagtatcgcaccgccattctgtatttggtg
gaaactcatgccactactatcattgttggcgagacgggtagcggcaaaactactcaaatt
cctcagtacctcaaagaagcaggttgggctgatggtggccgcgtaattgcctgcacccaa
ccaagacgactggctgttcaggcagttgcttctagggtggctgaagagatgggtgtaaag
cttggagaggaagttggttatacgatccgatttgaagatcttacaaacacagatgtaaca
agggtaaagtttcttacagatggtgtgttactcagagaaatgatggatgatcctcttttg
accaagtatagtgtaataatggtggatgaggcccrtgaaaggtctatctcaactgacatg
ttacttggtctcttgaaaaagattcaacggcggcgacctgatctgcgattgattatctct
tctgctacgattgaggctaaatctatgtcaactttcttccaacccagcaaaaggcgtcac
agatttgaaggtgaggcacttgaaccaaaggtggaacctgccatcctctcagttgaggga
agagggtttaatgtacaaatcttctacctcgaggagcctgtttcaaactatgtccagtct
actgtttcaactgtattgtcaattcatgaacaggaacctccaggtgatatacttgtattt
ctcactggccaaggtgatattgattctgctattcaattgcttagagaagaagagcgaaat
gatcgaaaaaaatcagaattgatcgtcttgcctctgtactctgggctttcacgtgcagag
caggagcttgtgttctcacccacacccagggggaagaggaaagtagtgatttcaacaaat
atagcagagacatcattaactctcgagggcattgtctatgttgttgacagtgggttctct
aagcagcggttttacaatccaatatcagatattgaaagccttattattgcaccaatatct
aaggcctcagctagacaaaggactggtagggctggaagaattcgacctgggaagtgttac
agactgtatacagaagagtatttcatcaatgacatgcctgctgagggtattcctgaaatg
caaagatcaaatcttgtttccagcgtcattcagttgaaagccttagggattgacaatatt
ctaggctttgattggccatcacctccatctcctgaagtaatggttcgggcactagaagtt
ctttattcacttggagtcttggatgatgatgcaaagcttacttctccagttgggtttcaa
gttgcagagattccacttgagccaatgatctcaaaaatgatcttagcttctggtgagctt
gggtgctcagaggagatcattacgattgctgctgtactgtcaatccagtccatttggact
tctagtaggggagcacaaaaggagcttgatgaagcaaggttgcgatttgctgcagctgag
ggtgaccatgtgacctttcttaacgtgtacaaaggatttcttcaatctaataaatcttca
cagtggtgtcataagaactttatcaattatcaagctatgaaaaaagttatcgaagttaga
gaacaactcagaagaatagctcagagattaggcatcgtcttgaaatcatgtgaaagagat
accatggctgtacgcaaagcggttactgctggattttttgctaatgcttctcatttagag
gcatacagtcacaatggaatgtacaagactaccagaggctctcaagaagtttatatccat
ccctcttcagtgctattcagagttaatccaaagtgggtcatatatcattcgctcgtgtcg
accgatcgacaatatatgcgtaatgtcatcaccatagatcccggatggttaacggaggcc
gctccccatttttaccagtacaggcagctcagccatatgcctcactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (15)   
   Pfam (15)   
All databases (32)   

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