KEGG   Momordica charantia (bitter melon): 111012000
Entry
111012000         CDS       T05045                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03020  RNA polymerase
mcha03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111012000
  09124 Replication and repair
   03420 Nucleotide excision repair
    111012000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcha03021]
    111012000
   03019 Messenger RNA biogenesis [BR:mcha03019]
    111012000
   03400 DNA repair and recombination proteins [BR:mcha03400]
    111012000
Transcription machinery [BR:mcha03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     111012000
Messenger RNA biogenesis [BR:mcha03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111012000
DNA repair and recombination proteins [BR:mcha03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111012000
SSDB
Motif
Pfam: SHS2_Rpb7-N S1 Vg_Tdu
Other DBs
NCBI-GeneID: 111012000
NCBI-ProteinID: XP_022141702
UniProt: A0A6J1CIV0
Position
Unknown
AA seq 176 aa
MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
NT seq 531 nt   +upstreamnt  +downstreamnt
atgttcttccacatagtgttggaaaggaatatgcagctgcaccctcggcacttcggtcgt
aacctccgtgagaatctggtttccaaactcatgaaagatgtcgaggggacttgcagcgga
cgacatggttttgtagtagcaattacaggaattgagaatattgggaagggattgattcgt
gacggcacaggttttgtcacttttcctgttaaataccaatgtgttgtttttcgaccattc
aagggagaaatcttagaagcagttgtttcaatggtaaacaagatgggttttttcgctgaa
gctggacctgttcagatttttgtttcaaaccatttgataccagatgatatggagttccag
tctggagatatcccaaactacaccacttcagatggatcagttaagattcagaaggacagt
gaagttcgattaaagattattgggactcgagtagacgcgactgaaattttttgtattgga
accataaaagatgacttcttgggtgtgataaatgatcctgcagcagcttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

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