KEGG   Momordica charantia (bitter melon): 111012507
Entry
111012507         CDS       T05045                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03020  RNA polymerase
mcha03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111012507
  09124 Replication and repair
   03420 Nucleotide excision repair
    111012507
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcha03021]
    111012507
   03400 DNA repair and recombination proteins [BR:mcha03400]
    111012507
Enzymes [BR:mcha01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     111012507
Transcription machinery [BR:mcha03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     111012507
DNA repair and recombination proteins [BR:mcha03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111012507
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 111012507
NCBI-ProteinID: XP_022142367
UniProt: A0A6J1CMJ7
Position
Unknown
AA seq 1199 aa
MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
NT seq 3600 nt   +upstreamnt  +downstreamnt
atggacgaatacgaggagtatgatcggaatatgaacgaggacgacgatattgatcagtct
atgcaagatgacgaagaagagatcactcaggaagacgcttgggcagtgatttcagcctat
tttgaagagaaggggttagtccggcagcagctcgattccttcgatgagtttattcagaat
actatgcaggaaattgtggacgaatctgccgatattgagattcgtcccgagtcgcagcac
aatcccgggcaccagtcggatgttgctgagacaatatacaagatcagctttggccagata
tacttgagtaagccaatgatgactgaatctgatggagagactgcaacattatttcccaag
gctgcacgactgaggaatctaacatactcagcgcctttgtatgtggatgtttcaaaaaga
gttataaagaaaggccatgatggtgaagaagttactgaaacacaagattttacaaaagtt
tttattgggaaggtacccatcatgctccgatcgagttattgcacgctgtatcagaattct
gagaaggatctgactgagcttggggaatgtccatatgaccaaggaggatattttatcatc
aatgggagtgaaaaggttcttattgcacaagagaagatgagcacaaatcacgtatatgtt
ttcaagaaaagacagccaaataagtacgcctttgtggcagaagtccggtctatggctgag
tcgcaaaatagacctcctagtaccatgtttgtacggatgctttctcgaactagtgccaag
gggggctcttcaggacaatacatacgtgccactctaccttatattcgaaccgagattcca
attattattgtgtttcgtgctttaggatttgttgctgacaaggatattctagagcatata
tgttatgacttctctgatactcaaatgatggagttgcttagaccttcccttgaagaggcc
ttcgttatccaaaatcaacaggttgcattagactatatcgggaagagaggatcaacagtt
ggtgtgaccaaggaaaagaggattaagtatgccaaagagatccttcaaaaggaaatgctt
ccccatgttggcgttggtgaattttgtgagactaagaaggcatactattttggttatata
attcaccggctactcttatgtgcccttggccggagagctgaagatgatagggaccactac
ggaaacaaaaggctggaccttgctggtcctttactcggaggcttgtttagaatgctattt
agaaagttaacaagagatgtgagaggttatgtacaaaagtgtgttgataatggaaaggat
gttaatttgcaatttgccatcaaagcaaaaactattacgagtggcctgaagtattcactt
gcaactggaaactgggggcaggcaaatgcagctggtacaagagctggagtgtcacaggtg
ttaaatcgtttgacatatgcttctaccttgtcgcatttacgaagactgaattcaccaatt
ggtcgagaaggtaaattggccaagcctcggcagttgcataattcacaatggggaatgatg
tgtcctgctgaaacacccgaaggacaagcatgtggactggtaaaaaatctggcattgatg
gtctatataacagtcggatctgcggcatatcctattttggaatttttggaagaatggggc
acagaaaattttgaggaaatttctcctgctgtcattcctcaagcaacaaaaatttttgtc
aatggttgttgggttggtatccaccgggatcctgaaatgttggtgaagactttgagacgg
ctgaggcgacgggttgatgtaaatactgaagtaggagtggttagagatatccgtctgaaa
gaattacggatatatactgattatggtcgatgcagtcgtccattattcattgttgagaaa
caaagactcctcataaagaagaaggatatccatgctcttcagcagagggaatccccggaa
gatggtggctggcatgatcttgtggcaaagggattcatagaatacatagatactgaagaa
gaggaaactactatgatttccatgacaattagtgatcttatacaagcaaggataaaccca
gttgaggcttattctgacacctacactcattgtgaaattcatccatcattgattttgggc
gtttgtgcttcaattattccatttcctgaccataaccagtccccacgtaacacttaccaa
tctgctatgggtaaacaagctatgggaatctatgtcaccaactaccaatttcgaatggat
actttggcctatgttctgtattatccacaaaagcctcttgtgactacacgagctatggaa
cacctccatttcaggcagcttccagctggcattaacgccattgttgccattgcttgctac
tccggttataaccaggaagactcggttatcatgaatcaatcctctattgaccgtggattt
tttaggtcacttttcttccggtcatacagggatgaggaaaaaaaaatgggaactctagta
aaagaagattttggacggccagacagaagtaatactatgggtatgaggcatggctcttat
gataaattggacgatgatggtcttgcaccccctggtactagagtatcaggtgaggatgtt
attattggaaagacgactcctctttctcaggaagaagctcagggacaagctgcacgttac
tcaagacgtgaccatagcattagtttacgtcacagtgaaaatgggattgtggatcaagtt
ctactgactacaaatgctgatgggttgagatttgttaaagtgagggtgagatctgtccga
atacctcagattggggataagttcagtagtcggcatggtcaaaaaggaacagtggggatg
acttatacacaagaagacatgccttggactgtggaaggaatcacccctgatattattgtg
aatccacatgctattccctctcgaatgactattggtcagcttattgagtgtatcatggga
aaggtggcagcccacatgggaaaagaaggagatgctaccccattcactgatgtcactgtg
gacaatatcagtaaggctctgcataagtgtggttatcagatgcgtggattcgagaccatg
tataatggccatacaggccggcggctctcagccatgatattcctcggcccaacctattac
caaaggctgaagcatatggttgatgacaaaatccattcacgtggaagaggtcctgtgcag
atccttacaaggcagcctgctgaaggtcggtctcgagatgggggtctccgatttggagaa
atggagcgcgactgcatgattgcccatggtgctgctcatttccttaaggagaggttgttt
gatcaaagtgatgcgtatcggatccacgtctgcgagtgctgtggattaatagccatcgca
aatctcaagaagagttcttttgaatgtaggggttgcaaaaacaaaacagacatcgttcag
gtgtacatcccttacgcctgtaagcttctcttccaagagctcatggctatggcaatagca
ccaaggatgttcacaaaggagattaaaccattaaaagaccaaaagaagaaaggatcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

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