KEGG   Momordica charantia (bitter melon): 111014460
Entry
111014460         CDS       T05045                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
  KO
K12607  CCR4-NOT transcription complex subunit 10
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111014460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcha03019]
    111014460
Messenger RNA biogenesis [BR:mcha03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     111014460
SSDB
Motif
Pfam: TPR_14 TPR_2 TPR_1 TPR_19 TPR_11 TPR_8 ANAPC3 Coatomer_E DUF627 Fis1_TPR_C
Other DBs
NCBI-GeneID: 111014460
NCBI-ProteinID: XP_022144890
UniProt: A0A6J1CSW9
Position
Unknown
AA seq 856 aa
MDARDSPSSAAPNRDGSSSAAEEDGAVSVTAALAKDAASLFQSGKYAGCVEVLNQLLQKK
EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNHVKKRSENLAISSGEQIDTLNPENKSTLG
KGNNALAHQTAANNANIVYMDEFDASIVTLNIAVIWFNLHEYTKALAVLEPLYQNIEPID
ETTALHICFLLLDVGLACRDASLSADVLLYLEKAFGVTSTSQSENGITGVQQSTNVVAKS
SSVPTNASASESSNTDLAASVNASENPLSRTLSEETFEYESMLSTLDIGGQNLPTQAGFS
SSNVLLRTPVDRSLSTVDLKLKLQLYKVRFLLLTRNLKQAKREAKHAMNIARGRDSSMAL
LLKAELEYARGNHRKAMKLLLASSNRTDMGISSMLNNNLGCIYNQLGKYHTSTVFFSKAV
SNSAALWKDRKPTTFSQDNSLLIVYNCGVQYLACGKPLLAARCFQKASLIFYNRPLLWLR
LAECCLMALEKGLLKDNLADSDRSDVKVHIVGKGRWRQLVLEDGVSRNGCTYSSGKEDGH
FNSEGQPKLSVSLARQCLSNALYLLNHSETSFLHSVLASNSSMEERDSSEVAASRKNYKN
LHSIDSKASSVTLGSSQISANGDAKEQKGATIQELVQNSLSYYDDISRRENLLIKQALLA
NLAYVELKLGNPLRALTIARSLVDLPDSSKVYTFLGHIYAAEALCLLNRPKEAADHLLCY
LSGGNSFKLPFSQEDCELWQLDGTADLEGANGGPATATNYSSSHDDPHGIKFLRPEEARA
VLYANFATLSALQGEFEQARQFVSEALSIEPNSPEATLTAVYVDLALGKSQEAVARLKQC
SCVRFLPSGLTMKRSS
NT seq 2571 nt   +upstreamnt  +downstreamnt
atggacgctcgagattcaccttcatcggccgccccgaatcgagatggctcctcgtcggct
gctgaggaggatggtgctgtatccgtcaccgctgctcttgctaaggatgcagcatcgctt
ttccaatcgggaaagtatgctgggtgtgtagaggtcttgaaccagctgttgcagaagaaa
gaagacgatcccaaggtacttcataatatcgccattgctgaatacttgagggatggttgt
tccaatcctaagaagttgcttgaagtattgaatcatgtcaagaagaggagtgagaacctt
gcaatttcatctggagaacaaatagatactctgaatcctgaaaataagagtactttgggt
aaaggaaataatgcattggctcatcaaactgcagcaaataatgccaatattgtatacatg
gatgagtttgatgcctccattgttaccctaaacattgccgtcatatggttcaatctccat
gaatatacgaaggcgttggcagttcttgaacctttatatcaaaatattgaacccatagac
gagacaacagctcttcatatttgctttctgctgctggatgttggactagcctgccgtgat
gcatcattgtctgcggatgttctactttatctggaaaaagcttttggggttaccagtaca
agccaaagtgaaaatggaattacaggggtacagcaatccactaatgtagttgcaaaatct
tcatctgttcctaccaatgcttctgcttctgagtcttcaaatacagatttagctgcaagt
gtgaatgcctcggagaatcctctatcgagaactttatcagaggagacatttgagtatgag
tccatgctatcgactctggatattggtggtcagaatctaccaacacaggctggtttttca
tcttcaaatgttcttttaaggaccccagttgatcggtctctatctacagttgatctcaaa
cttaaattgcaactatataaggttcgctttcttcttctcactagaaacttaaagcaagcg
aagcgagaagcaaagcatgccatgaacatagctcgtggaagagattcatccatggctctt
ctcttaaaggctgaacttgaatatgcccgtggcaaccatcgtaaggccatgaagctgcta
cttgcatcaagtaaccgaaccgacatgggaatttcaagcatgctaaacaacaaccttggc
tgcatatataatcaacttgggaagtatcatacatcaacagtattcttttccaaagctgtt
tccaatagtgcagctctctggaaggatagaaagccgacgactttttcacaagacaactca
ctccttatcgtgtataattgcggtgttcagtacttggcttgtggaaaaccacttcttgct
gctcggtgcttccaaaaagccagtttgattttctataaccgccccctgttgtggctccga
cttgccgaatgctgcctaatggctttagagaaggggcttctaaaggacaaccttgctgat
tccgatagatcagacgtcaaagttcatattgttggaaagggaagatggaggcagcttgta
ttggaagatggagtctcgagaaatggatgcacatattcctctggaaaagaagatgggcat
ttcaatagtgaaggacaaccgaagctgtcagtttctcttgctcggcaatgtctttctaat
gccctgtacttattaaaccattccgagacgagctttttgcactctgtattggcctctaat
tcttccatggaggagagagattcaagtgaagtggcagcttccaggaaaaattataagaac
ttacattcgattgattccaaggcttcctccgtaactctaggctcaagtcagataagtgca
aacggtgatgcgaaagaacagaaaggtgcaacaattcaggagcttgtgcaaaactccctc
tcctactatgatgatatttctcggagagagaacctgttgattaagcaagcacttcttgca
aacctggcctatgttgagttgaaacttggaaacccgttgagagccctgacaattgcaagg
tctcttgttgatcttcctgacagttctaaagtttacacattcttaggccacatttatgct
gcagaggccctttgcttgctaaatagaccgaaagaagctgccgaccatttattatgctat
ttgtctggaggaaatagtttcaaattgccattcagccaagaggactgtgagctatggcaa
ctagatgggactgctgatcttgaaggtgcaaatggaggaccggcaactgccaccaattat
tcgtcgtcccacgacgaccctcatggtatcaagttcctcagacccgaggaagcacgggca
gtcctctatgcaaattttgccactctttcggctttacaaggagaattcgaacaggctcga
cagtttgtatcagaagcattatcgattgaaccaaacagtccagaagccactttgaccgca
gtttacgtggatctcgctctcggtaagtcgcaagaagccgttgccagattaaaacagtgt
agttgtgtaaggttccttcccagtggattgacaatgaaaagatcttcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (10)   
All databases (23)   

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