KEGG   Mycoplasma capricolum subsp. capricolum ATCC 27343: MCAP_0712
Entry
MCAP_0712         CDS       T00309                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mcp  Mycoplasma capricolum subsp. capricolum ATCC 27343
Pathway
mcp03030  DNA replication
mcp03410  Base excision repair
mcp03420  Nucleotide excision repair
mcp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mcp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MCAP_0712 (ligA)
   03410 Base excision repair
    MCAP_0712 (ligA)
   03420 Nucleotide excision repair
    MCAP_0712 (ligA)
   03430 Mismatch repair
    MCAP_0712 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mcp03032]
    MCAP_0712 (ligA)
   03400 DNA repair and recombination proteins [BR:mcp03400]
    MCAP_0712 (ligA)
Enzymes [BR:mcp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MCAP_0712 (ligA)
DNA replication proteins [BR:mcp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MCAP_0712 (ligA)
DNA repair and recombination proteins [BR:mcp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MCAP_0712 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MCAP_0712 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     MCAP_0712 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MCAP_0712 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 5_3_exonuc PTSIIA_gutA RNA_ligase UPF0758_N
Other DBs
NCBI-ProteinID: ABC01419
UniProt: Q2SRE1
Position
complement(825742..827748)
AA seq 668 aa
MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP
SQKVGGTVSEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNNEYVAELKIDGL
SISLVYENGVLVSAATRGNGVIGEDVTTNVRTIKSIPLKISKKERVEVRGEIYLSKAEFE
KINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSPNLNQYESIL
KLNQLGFKTNKETMLCKNLDQIKAYIDKYTNLKNDLDYQIDGIVFKINDKNLQNSLGFTS
KIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAATLNNAEYI
KSKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQPILYCPNCHSLLEKNENEVDQ
FCINSSCSMKILRSLQHFSSREAMNIVSLGDRSLEILFNLEIIQNISDIYKLEEYKDQIL
AIENFGLKSYLNLIDSINMSKNNSLEKVLFGLGIRHIGSKTAKILARKYQNIDNLMKASY
DELIQINSIGESLALSIIDWFKIEDNLKLINELKSFNINFNYLGAKINSDSIIANKTFVI
TGTLTRPREEFKTLIENNAGKISGSISKQTDYLLAGNNVGSKLEKAKKLGVIIIDEQQFF
DLLKSEKG
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgtcaaaagaacaaattctactaagaattaatcaattaaaagaacagttaaacttatga
tcaaaacaatattatgttgatgataacccaagtgttgatgatactgaatatgatttagct
ttaaaagaactaattagtttagaaaatttatatcctgaatttattactagtgattcacct
agtcaaaaagttggtggaacagttagtgaaaagtttttaaaaataactcataaaacacca
atgttaagtttaggtaatgtttttaattttgatgaatttttagaatttaatactcaagta
agtaaagtttcaaataatttaaataatgaatatgtagctgaattaaaaattgatggttta
tcaatttcattagtttatgaaaatggagttttagtatcagctgctactagaggtaatgga
gtaattggtgaagatgttactactaatgtaagaactattaaatccattcctttaaaaatt
agtaaaaaagaacgtgttgaagttagaggagaaatttatttatctaaagctgagtttgaa
aaaatcaatcaaaaaagattattaaataatgaagatttatttataaatccaagaaatgca
gctgctggtactttaagacagttagattcaaaaatagttgcaagtagaaatcttgatgct
tttttatattattacattagtgatgattcacctaatcttaatcaatatgaatctatttta
aaactaaatcagttaggttttaaaactaataaagaaacaatgttatgtaaaaatttagat
caaattaaagcatatattgataaatatactaatttaaaaaatgatttagattatcaaatt
gatggaattgtatttaaaattaatgataaaaatttacaaaatagtttaggattcactagt
aagattccaaagtgagcaattgcttataagtttccagctgaaatcaagcaaactaaacta
ttagatatatttgctacagttggaagaactggaaaaattacttataatgctaaacttgag
cctgtttttttaatgggagctacaattagtgctgctactttaaataatgcagaatatatt
aagtcaaaagatttaagaattaatagtatagttaaaataaaaaaagctggagatgttatt
ccagaagttattgaagctattaaagatgaaactttttataacttagaagtttttcaacct
atattatattgtccaaattgtcattctttattagaaaaaaatgaaaatgaagttgatcag
ttttgtataaattcttcttgttctatgaaaatattaagatcattacaacattttagtagt
agagaagctatgaatattgttagtttaggagatagaagtttagaaattttatttaattta
gaaattattcaaaatatttcagatatttataagttagaagaatataaagatcagatttta
gcaattgaaaattttggtttaaaaagctatttaaatttaattgattcaattaatatgtct
aaaaacaattctttagaaaaagttttatttggtttaggaattagacatattggaagtaaa
actgcaaaaattttagctagaaaatatcaaaatatagataatttaatgaaagctagttat
gatgaattaattcaaataaattcaattggagaatcattagctttatctattattgattga
tttaaaatagaagataatttaaaactaattaatgagctaaaatcatttaacatcaatttt
aattatttaggagcaaaaattaattctgattcaataattgctaataaaacatttgtaatt
actggaactttaacaagaccaagagaagaatttaaaacattaattgaaaataatgctggt
aagataagtggttcaatttctaaacaaactgactatttattagctggtaataatgtgggt
tctaaactagaaaaagcaaaaaaattaggtgttataattatagatgaacaacagtttttt
gatttattaaaatcagagaaaggataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (12)   
   Pfam (12)   
All databases (33)   

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