KEGG   Malus domestica (apple): 103401039
Entry
103401039         CDS       T03194                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit 1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103401039
  09124 Replication and repair
   03420 Nucleotide excision repair
    103401039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103401039
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103401039
Enzymes [BR:mdm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103401039
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     103401039
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103401039
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R TACC_C
Other DBs
NCBI-GeneID: 103401039
NCBI-ProteinID: XP_008337964
Position
15:complement(19535093..19543715)
AA seq 1820 aa
MDIRFPFSPAEVAKVKCVQFGILSPDEIRQMSVVEIEHSETMLGGKPKTAGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFIKTVLSVMRCVCFNCSKILVDEDDHK
FKQAMRIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI
EGMKMNAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQILGLNPKYAR
PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFILFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LQRTSAWHSESESGNITPGDTLVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL
EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLDESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKTEFDKTFTYELDDEYWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ
LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP
GDDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPEPTSTIIDEDIDFVRAYYEMPDEEV
NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA
EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPXYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSSAYSP
SSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPGSPLTSGVSLDYSSSSPQY
SPSAGYSPSQPGYSPSSASQ
NT seq 5463 nt   +upstreamnt  +downstreamnt
atggatatccggtttcccttctcgccagcggaggtggcgaaggtgaaatgcgtgcagttc
ggcattctcagccccgacgaaatcaggcaaatgtctgtggtggagattgagcacagcgag
actatgttgggaggcaaaccgaagacggctggtttgagtgatcctcggctcggtacaatt
gaccggaagttgaaatgtgagacttgtacagccaacatggctgagtgccccggccatttt
gggcacctagagcttgcgaaaccaatgtttcacatcggattcataaagactgtgttatct
gtaatgcgatgcgtttgcttcaattgctcgaaaattctagtcgatgaggacgaccacaag
tttaagcaagctatgagaataaaaaatccgaaaaacaggctgaaaaagattttggatgcc
tgcaaaaacaaatccaaatgtgaaggtggtgatgaaattgatgtccaaggccaagatact
gaagagcctgtaaagaaaagtcggggtggctgcggtgctcagcagcccaagctctctatt
gagggtatgaaaatgaatgcagagtacaaagcccaaaggaagaaaaatgatgaccaggaa
cagcttcctgaacctgtggaaaggaaacagacccttactgcggaaagggttcttagtgtt
ttaaagagaataagtgatgaagactcccaaatattggggttgaacccaaagtatgctcgg
cctgattggatgattctacaagttctgcccattcctccacaacctgtgagaccctctgta
atgatggacacctcatccaggagtgaggatgatttgactcatcaattggcgatgattatt
cgtcataatgacaatctgaggcggcaggaacgaaacggttctcctgctcatatcatttca
gagtttgcacaacttctgcaattccacattgccacttattttgacaatgagttgccagga
ctaccaagggctacgcagagatcagggaggcctattaaatcaatttgtagtagactgaag
gcaaaggaagggcgtataagaggcaacttaatggggaaacgtgttgacttttcagcacga
acagtgattacccccgatccaaacataaacattgatcaattaggagtgccatggagcatt
gctttgaatctcacataccctgagactgtgactccatataatattgaaaggttgaaggag
cttgttgagtatggcccccatcctccgcccggtaaaactggtgcgaagtatataataaga
gatgatgggcaaaggcttgatcttcgttatttgaagaaaagcagcgatcatcatttggag
cttggatataaggtggaacgtcatttgaatgacggagactttatcctcttcaatcgacaa
cctagtctccataaaatgtctatcatgggccacagaatcaagatcatgccatactcaaca
tttcgattgaatttgtctgtgacatcgccatataatgctgactttgacggggatgaaatg
aacatgcatgtgccccagtcctttgaaaccagggctgaagtattggagctcatgatggtg
ccaaaatgcatcgtctcacctcagtcaaatcgacctgtcatgggaattgtgcaggacaca
cttttaggttgtcgtaagatcaccaagagggacaccttcatagagaaggatgttttcatg
aatatcttgatgtggtgggaggattttgatggaaaagttcctgctcctgcaattttgaag
ccccggccactttggactggaaaacaggtgttcaatcttataataccaaaacaaataaat
ctccaaagaacttctgcatggcactcggaatcagagagtgggaacataactccaggggat
actcttgttagaatagaaaagggtgaattgctttctggaactctgtgcaagaaggccctt
gggacttctacaggaagtcttattcatgttatatgggaagaggttggtccagatgcagcc
cgcaagtttctgggccatacccaatggcttgtgaattactggctgctgcagaatgctttt
agcattggaattggagatacgattgctgatgcagccacaatggagaaaatcaatgaaaca
atttccaaggcgaaaaatgaggtgaaagatcttataagtaaagcccaatctaagcagctg
gaggctgaacctggacgaaccatgatggattcgtttgaaaacaaagtgaaccaggtgttg
aatagggctcgtgatgatgctggaagtagtgctcaaaagagtttagatgagagcaacaat
cttaaggccatggttacagcagggtccaaagggagttttatcaacatatcacagatgact
gcttgtgtgggacagcagaacgttgagggtaagcgaatcccgtacgggttcatagaccgg
acgttgccccactttactaaagatgattatggaccagaaagtcgtggatttgtagagaat
tcatacctgcgtggactaactccacaggagttcttttttcatgctatgggtggtagggaa
ggtcttatagatactgctgttaagacatctgagactgggtacatccaaaggagactggtg
aaggctatggaggatattatggtgaaatatgatggcacagtacgtaattctttgggtgat
gtcattcagtttctatacggggaagatgggatggatgctgtttggatagaatcgcaaaag
ctggattctttgaaaatgaagaaaacagaatttgataagacttttacgtatgagttggat
gatgaatattggaatcccgactacatgttgcacgaacatgttgaggatctcaaaacgatt
agagagttccgtaatgtgtttgatgcagaagttcagaaacttgaaacagatagattacaa
cttggaacagagattgcagtcacaggtgataattcttggccactgcctgttaatttgaag
aggcttatttggaatgcacaaaaaacctttaagattgacttccgaaggacttctgatatg
cacccgatggaaattgtggaagctattgataagctccaggagagactgaaagttgttcct
ggtgatgacttgttgagtgtcgaagcacagaagaacgcaacattgtttttcaacatttta
cttcgcagcacttttgcaagcaaacgggtgttggatgagtacaggcttactcgtgaagca
tttgaatgggttattggggagatagaatcacgcttcctgcaatcgcttgtagcacctggg
gaaatgattggctgcgttgctgcacagtctattggagaacctgccactcagatgacactg
aatactttccactacgcaggtgtgagtgcaaagaatgttaccctaggtgtccccaggttg
agggaaattattaatgtagccaagagaatcaaaacgccatccctgtctgtctacttaaag
cctgaagctaataaaacgaaggagagggcgaagaatgtgcagtgtgctttggaatacacc
actctacgaagtgtaactcaagctacagaagtatggtacgatccagaacccacaagcaca
ataattgatgaggatatagattttgtgagagcttactatgaaatgccagatgaagaagtt
aatcctgataaaatttcaccttggttgcttcgcatcgagttgaatcgcgaaatgatggtg
gataagaagttgagcatggctgacattgctgagaagattaaccttgaatttgatgatgat
ttaacttgtatcttcaatgatgacaatgcagaaaaattgatccttcgtatccgtatcatg
aatgctgaagctccaaaaggggagatggttgatgaatctgctgaagatgatgtttttctg
aagaagattgagagtaacatgctgacagagatggctcttcgtggtatcccagatattaac
aaagtgttcattaaacatggtaaagttaataagttcgatccaaatgaagggtttaaagca
gagcaagagtggatgctggatacggaaggggttaatctcttggctgttctgtgccatgat
gatgttgatgctaggcgcacaactagtaatcatttgattgaaattctggaaattctcgga
attgaggcagttcgtcggtcattgttggatgagttgagggttgttatatcatttgatggg
tcctatgttaattataggcatctcgctatcctttgtgacacgatgacgtaccgtgggcac
ttaatggcaataacccgccatggcattaatagaaatgacactggtcctatgatgaggtgc
tcctttgaagagactgttgatattcttcttgatgctgcagtgtttgcagagacggattat
ttaagaggcgtgacagaaaatataatgttagggcaacttgcaccaattgggacgggagat
tgtgccctgtatctcaatgatgagatgctgaagaacgccatcgaactccagttgcccagt
tacatggatggtcttgattttggtatgacaccatctcgttctccagtgtcaggaacacca
tatcacgagggcatgatgtcccctaattatttgctgagcccaaatcttcggctgtcacca
atttcggatgctcagttttctccttatgttggaggaatggcattctctcctacttcctct
ccaggctacagcccatcatcccctggatacagcccttcctcccctggatacagccccact
tctcctggctacagtcccacctctccagggtatagccccacttctcctgggtacagtccc
acctctccgacatatagtcctagttctccgngctatagtcccaccagtccagcttactct
cctacgagtccatcatactcgccaacctctcccagctacagccccacctctccaagctac
agccccacttcaccaagctacagccctacttcccctgcttacagccccacttcacctgct
tacagccccacttcccccgcatatagccccacttcgccatcttacagtcccacgtctcct
tcctacagcccaacttcgccatcctacagcccaacttcgccttcctacagcccaacttct
ccttcctacagtccaacatctccatcctacagccctacctcgccagcctacagcccaact
tctcctggttacagcccaacctcgcctagttatagtccaacctcgcccagttacagccct
acatctccaagctataatcctcagtctgccaagtacagtccgtcatcagcttactctcca
agcagtccaagattgtcaccatctagtccatacagtcctacctctccgaactacagccca
acctcaccatcatattcccccacatctccatcttactctccctcaagccccacatacagt
cccggcagcccattgacttctggagtgagcctagactatagctcgagttcccctcagtat
agtccaagtgctggatactcacccagtcaacccggttactcgccatcatctgctagccag
tag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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