KEGG   Malus domestica (apple): 103409468
Entry
103409468         CDS       T03194                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03013  Nucleocytoplasmic transport
mdm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    103409468
   03015 mRNA surveillance pathway
    103409468
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103409468
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     103409468
    5.6.2.5  RNA 5'-3' helicase
     103409468
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     103409468
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     103409468
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase Helicase_RecD nSTAND3 PhoH ATPase AAA_16 SRP54 AAA_22 Ribosomal_S13_N AAA_25 AAA
Other DBs
NCBI-GeneID: 103409468
NCBI-ProteinID: XP_008346507
Position
6:5586669..5599476
AA seq 1285 aa
MDSEPNNLFDTASQPDTSNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLSEPA
DRDRGGGGVGSDHQSDASPVSAAPGSATKARAGGSGSNAGNNQVVDGLTAGMSVLNFEDT
GDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELYKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQST
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFFGGGPGVIPNDSFGSV
ASAGQNVDRRSNRGRGSYLPPGPPNGTHKPGVHPAGYPMPRAPLSPFHGGPLSQPYAIPT
RGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQNVGNMGSTFNFPALE
NPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMAGMSQEFLGDDFKSQGSHVPYNVA
DFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGTGNDFMSQDYMPHGSQGLF
TQVGFNDPSQDEASQNHYGVANANQLQSQGFMNSLYSQPFAHYNTQPMNLQAPPQQQQQQ
QQQPQPQPQPQQGQTSQNQKIHYNG
NT seq 3858 nt   +upstreamnt  +downstreamnt
atggattccgagcccaacaacctctttgacacggcgtcgcagcccgacacctccaacgac
gcctacaccttcctcgaattcaacacccagggcgaggactttgactacccggagttccgc
gacccgattcgctctcctgtcgcctggcccactccttcagattccttatcggaacctgca
gaccgtgaccgtggcggtggtggggtcgggtcggaccaccagtccgatgcgtcgccggtt
tctgctgccccgggcagcgccacaaaggctagggcaggtgggtcgggcagtaacgccggc
aataatcaggtggttgacggcctaacggctgggatgagtgtgcttaactttgaggatact
ggggatgacgacaattacgagtttggaaaaggggatttcacagaacatgcgtgccggtac
tgcggcgtgtcgaacccggcttgcgttgtgaggtgtaatgtgccttcgtgtcgaaaatgg
ttctgtaattcaagggggaacacgtccggctctcatattgtgaatcacctggtccgagca
aaacacaaggaagtctgtcttcataaagatagcccattgggagaaacaatccttgaatgc
tacaactgtggatgtcgtaatgtattccttcttggatttatttcagccaagacagagagt
gttgttgttcttctttgtagggaaccctgcttaagtgttaatgcattgaaggatatgaac
tgggatctgagccagtggtgtcccctgatagatgataggtgtttcttgcagtggcttgtt
aaggtcccgtctgaacaggagcagctaagggcacgccaaatcagtgctcaacaaattaat
aaagtagaagaactttggaagtccaatcctgatgcttcccttgaagatcttgagaagcct
ggtgtggatgatgaaccccaacctgtggccttgaagtatgaagatgcttaccagtatcaa
aatgtgtttgcaccacttattaaacttgaagctgactatgataaaatgatgaaagaatct
caaagcaaagacaatgtcacaattcggtgggatattggtcttaacaagaagcgtattgct
tattttgtgtttccaaaggaagacaatgagttacgtcttgtacctggtgatgagttgcgg
cttcgttattctggagatgcagctcatccagcatggcagtcagtgggacatgttatcaag
ttaactgcacaagaggaggttgcacttgaacttcgtgccagtcagggagttccagttgat
gtgaaccatggcttcagtgttgactttgtctggaagagtacaagttttgatcggatgcag
ggggccatgaaagcttttgcagtggacgagacaagtgttagtggatatatttaccatcat
ttgttaggccatgaagtagaggttcaaatggtccgtaatacattgccccgtcgttttggt
gcacctggtcttccggagctcaatgcatctcaagtttttgctgtaaagagtgtccttcag
aagcctataagtttgatccagggtccacctggcacaggaaaaactgtgacttctgcagca
attgtgtatcacatggctaaacaaggccagggacaggttttggtctgtgctcctagtaat
gttgctgtagaccaactagctgagaagataagtgcaactgggttgaaggttgttagactt
tgtgcaaaatcaagggaagctgttagttctcctgttgagcatttaacccttcattaccag
gttcgtcatcttgacacgtcagaaaagagtgaactgtacaagctacaacaattgaaggat
gagcaaggagaattgtctagtagcgatgagaaaaaatataaggcactgaagcgggcaacc
gagagggagatttctcaaagtgctgatgtcatttgttgcacatgtgttggtgctggagat
ccacgattggccaattttaggttccgtcaggtacttattgatgagtctactcagtctacg
gagcctgaatgcctgattcctttggttcttggggcaaagcaggttgttcttgttggagat
cactgccagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggcttgcccag
tctctctttgaacgcctcgttttacttggtgtgaaaccaattagattgcaggttcaatac
cgaatgcatccagccttgtcagaatttccatctaatagcttctatgagggcacgcttcaa
aatggagtgaccatcaatgaaaggcaatcatcaggcattgattttccttggccggttccc
aatcgtcccatgttcttttatgtacagatgggccaagaggagataagtgctagtggaaca
tcctatctgaacagaactgaggctgctaatgttgaaaagattgtcacaacattcttgagg
agtggtgtagtccctagtcagattggagtgatcacaccatatgagggacagagagcttat
attgtgaactatatgtcgcgaaatggtgctctcagacagcaactttataaggaaattgag
gttgcaagcgtagattcatttcagggaagggaaaaggattatatcatcctttcgtgtgtg
aggagtaatgagcatcagggcatcggattccttaatgatcctcgcaggctcaatgttgct
ctaacacgtgctcgatatggtattgtcattcttggaaaccctaaagttcttagtaaacag
ccactgtggaatagcttgttgacacattacaaggaacacgagtgcttggttgaggggcct
ctaaataacctgaagcagagtatggtgcaatttccaaagcctaaaaagatctacaatgat
cggcgcctattctttggaggtggtcctggagttatccccaatgacagttttgggtctgta
gcctcagctggccaaaatgtggacagaagaagtaatcgtggtaggggttcttacctacct
cctggcccacccaatggtacccataagcctggtgtacatccggctggatatccaatgcct
cgggcacctctttcaccattccacggaggacccctttctcaaccgtatgctattccaact
cgtggagctgtgcatggaccagttggagctgttcctcatgtccctcaacctggaagtcgt
ggttttggggcaggacgtggaaatgctggtgctccaattggcagtcatcttccgcaccag
cagggcacacaacagaatgttgggaatatggggtctaccttcaactttcccgctcttgaa
aatccaaatagccaaccatctgttggtggccccttatctcaacctggatttgtcaataat
atgccagttcaagggccaagccaaacatttcgtgatggattttccatggcgggcatgtct
caggaatttttgggtgacgactttaaaagtcagggatcacatgttccttataatgttgct
gacttctccactcaggcttctcaaagtggatatgctgttgattatgttactcaaggagca
caaggtgggtttccagggaactttctgaaccagaactctcaagctggatattctcgattt
ggtacagggaatgacttcatgtctcaggactacatgcctcatggatcacaaggcctattt
actcaggtgggctttaatgatccatcacaggatgaagcatcacagaaccactatggagtt
gcaaatgccaatcaactccagtcccagggctttatgaactcgctgtactctcagcctttt
gcccattacaacacacagccaatgaacttgcaggccccaccacaacagcagcagcagcag
cagcagcagccgcagcctcagcctcagcctcagcagggccagacctcccaaaatcagaaa
atccactacaatggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (20)   
   Pfam (20)   
All databases (38)   

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