KEGG   Malus domestica (apple): 103439637
Entry
103439637         CDS       T03194                                 
Name
(RefSeq) E3 ubiquitin protein ligase RIN2 isoform X2
  KO
K10636  E3 ubiquitin-protein ligase AMFR [EC:2.3.2.36]
Organism
mdm  Malus domestica (apple)
Pathway
mdm04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103439637
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mdm04121]
    103439637
Enzymes [BR:mdm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.36  RING-type E3 ubiquitin transferase (cysteine targeting)
     103439637
Ubiquitin system [BR:mdm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    103439637
  Multi subunit Ring-finger type E3
   ERAD complex
    103439637
   LMBR1L-GP78-UBAC2 complex
    103439637
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4 CUE zf-rbx1 zf-RING_UBOX zf-ANAPC11 zf-RING_11 zf-C3HC4_2 E3_UbLigase_EDD zf-C3HC4_3 zf-RING_5 zf-RING_16 zf-C3HC4_4 zf-HC5HC2H Endonuclease_7 PHD
Other DBs
NCBI-GeneID: 103439637
NCBI-ProteinID: XP_008376431
Position
7:32157351..32162635
AA seq 587 aa
MGLRYIAISAACTAISFAGLQLWTETSLVKLKSDGLIEENLINAANFGHVFDLLLGSYTT
VGLLANFVLNAFILLVLCLKTIFFVELYSSETHKLIERLINYVIYKGTFLPLVIPPTIYH
AGLWSVWLIVLCSLKMFQALARDRLERLNASPSATPLTYFRVYSVLLLVLTVDIFWIRLC
VVIYKTLGLSMFLLLLFEPFSIAFETLQAILVHGFQLLDIWIHHSAWNSSNCESSKLFDT
SAVGLLLEWKGGLTRNLSFVLDMATLLMALGHYVHIWWFHGMAFHLVDAILFLNIRALLS
SIVKRIKGFIKLKKALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCSHLFHLA
CLRSWLDQGLNEIYSCPTCRKPLFVGRPENEVHPRSEETSSDEQLARQISLGLGRQNTPG
HAIPAGVFPNQTQNPAEGDPWRGTGLDSDWLHTWSSQGVDGAGPSTAVGSVGLGRVQMMM
RRLASVGETYAHTALEDGAWSLWPMNAPQVAATGPPIPPADDGRYQGGARNLHMRTPART
VNDNLANILAMAETVREVLPHMSDDLIFQDLQRTNSVTVTVNNLLQM
NT seq 1764 nt   +upstreamnt  +downstreamnt
atgggtttgaggtatatagccatctccgctgcatgtacagcgataagctttgcaggcctc
cagttgtggacggaaacttctttagttaaactaaaatcggatggactgattgaggagaat
ttgattaatgcggccaattttggccatgtatttgatctgcttttgggttcttatactacc
gttggactgctggcaaattttgtactcaatgcatttattttactcgttttatgtctcaag
actatattctttgtggagttgtattcttctgaaactcacaaattaatcgaacgccttatc
aattatgttatttacaagggcacttttctacccctggtcattcctcctacaatatatcat
gcgggcctgtggtcagtctggttgattgttctttgttctttaaagatgtttcaagctttg
gctcgagatcgacttgaacggttgaatgcatccccttctgccacaccattgacatatttt
cgtgtgtattcagtgttattgctggtgctgactgttgatattttctggataaggctgtgt
gtggtgatatataaaacactgggtttatctatgtttctcttgttattatttgagcctttc
agtattgcatttgagacattgcaggctattttggtgcatggatttcagttacttgatata
tggatccatcattcagcatggaacagttcaaattgcgagagttccaaattatttgataca
tcagcagttggtttattgttggaatggaaaggcggtcttactcggaatttgagctttgtt
cttgatatggccacattgttaatggcccttggtcactacgtgcatatttggtggtttcat
ggcatggcattccatctggtggatgcaatcctttttctaaacatacgtgccttgctaagt
tcaattgtaaaacgtataaaagggttcatcaaactgaagaaagccttaggtgctcttcat
gcagcacttccagatgcaacatctgaagaactacgggcatatgatgatgaatgtgcaatt
tgtagggaacctatggctaaggccaaaagactacactgcagtcacctttttcatcttgca
tgcttgagatcttggttggatcaaggtttgaatgagatctattcatgtccgacttgtcgc
aagccactttttgtaggtagacctgaaaatgaagtacatccccgcagtgaagaaacttcg
agtgatgagcagcttgctcgtcaaataagtttaggacttggtcgacaaaatactcctgga
catgcaatacctgctggtgtgtttcccaatcagactcagaaccctgcggaaggcgatcca
tggagaggtaccggactggattcagattggttgcatacttggtcaagccagggagttgac
ggggcaggtccttctacggctgtaggatctgttggactggggagagttcagatgatgatg
aggcgtcttgcatctgtaggggagacgtatgcgcacacggcccttgaagatggtgcgtgg
agcctctggcctatgaatgcccctcaggttgctgcaactggtccaccgattcctcctgca
gacgatggaagataccaaggaggagcacggaatttacatatgaggacccccgcacgtact
gtgaatgacaacctagcaaacatacttgctatggctgagacggtgagggaagttctgcct
catatgtcagatgacctaattttccaggatttgcagcgaacaaattcagttaccgttact
gtgaataatcttctccaaatgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (16)   
   Pfam (16)   
All databases (34)   

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