KEGG   Monodelphis domestica (gray short-tailed opossum): 100012197
Entry
100012197         CDS       T01031                                 
Symbol
POLR2B
Name
(RefSeq) RNA polymerase II subunit B
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
mdo  Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03020  RNA polymerase
mdo03420  Nucleotide excision repair
mdo05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:mdo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100012197 (POLR2B)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100012197 (POLR2B)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    100012197 (POLR2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdo03021]
    100012197 (POLR2B)
   03400 DNA repair and recombination proteins [BR:mdo03400]
    100012197 (POLR2B)
Enzymes [BR:mdo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100012197 (POLR2B)
Transcription machinery [BR:mdo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100012197 (POLR2B)
DNA repair and recombination proteins [BR:mdo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100012197 (POLR2B)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100012197
NCBI-ProteinID: XP_001362455
Ensembl: ENSMODG00000020704
UniProt: K7E2Q4
Position
5:complement(168649984..168688850)
AA seq 1174 aa
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtacgacgctgacgaggatatgcaatatgatgaagatgatgatgaaatcactccagat
ttgtggcaagaagcgtgttggattgttatcagttcctattttgatgagaaaggtttggta
cgacaacagttagattcttttgatgagttcattcagatgtctgtgcagagaattgtggag
gatgccccacctatagatttacaagctgaagctcagcatgctactggagaagttgaagaa
ccgcctcgatatctgctgaagtttgaacagatttatctctccaagcctactcactgggaa
agagatggtgctccttcacctatgatgccaaatgaagccagattgagaaatctcacgtat
tctgctcctctttatgtggacatcacgaaaacagttattaaagagggagaagaacagctt
cagacacagcatcaaaaaacatttataggaaaaattccaattatgcttcgttcaacatac
tgtctattaaatggtttaactgaccgtgatctctgtgaattaaatgaatgccctcttgat
cctggtggctatttcattattaatggatcagaaaaggttctgattgcccaagagaaaatg
gcaacaaatacggtttatgtgtttgccaaaaaagattccaagtatgcctatacaggagaa
tgtagatcttgcctggaaaattcttcccgacccacaagtactatctgggttagcatgctt
gcaagaggaggacagggtgcaaaaaagagcgcaattggtcagcgcattgtagctactttg
ccatacatcaagcaagaagttcccattatcattgtattccgagcattaggttttgtgtct
gatagagacattttagaacacattatttatgattttgaagatccagaaatgatggaaatg
gttaaaccttctttagatgaagcttttgtcatccaggaacagaatgttgcacttaatttt
attggctcacgaggagcaaaacctggtgtaactaaggagaaaagaattaaatatgcaaaa
gaagttttacaaaaagaaatgcttcctcatgttggtgtcagtgacttttgtgaaacaaaa
aaagcctactttttggggtatatggttcacagattacttctggctgctcttggaagaagg
gaattggatgacagagatcactatggaaataagagactggatctagctggtccactactt
gcattcttgtttagaggaatgtttaagaatttacttaaagaagtgaggatatatgcacag
aaattcattgatagaggcaaggactttaacttggagttggcaattaaaacaaggatcata
tcagatggcttaaaatattctttggctactgggaactggggtgaccaaaagaaagctcac
caggccagagctggagtctctcaggtgttaaatcgtctgacttttgcatctactctttct
cacttgcgtcgtttgaactctccaattggtagagatggtaaattagcaaagccaagacag
ttgcataatacactgtggggaatggtgtgtcctgctgagactccagagggccatgcagta
ggacttgtgaagaatttagccctgatggcttatatttctgtaggatctcagccttctcca
attctggagtttttagaagaatggagtatggaaaacctagaagaaatttctcctgctgct
attgctgatgcaaccaagatctttgttaatggctgctgggttggaatacataaagatcct
gaacaacttatgaataccctaagaaaattgcgacgccagatggatatcattgtctctgaa
gtttccatgatcagagacattcgagagagagagattcggatttatacagatgcaggtcga
atttgcagaccacttttaattgttgaaaaacagaagctacttttgaagaaaagacacatt
gatcagttaaaagaacgcgagtataacaactatagttggcaagatcttgtggccagtgga
gtagtagaatatattgataccttggaagaagaaactgtgatgcttgccatgactccagat
gacttacaggagaagggagttgcctattgttctacttatacccattgtgaaattcatcca
tcaatgatacttggtgtgtgtgcatctattattccttttcctgatcacaatcagtctcct
agaaacacatatcagtctgctatgggtaaacaggcaatgggtgtttatattaccaacttc
catgttcgtatggacacattggctcatgtgctctattatcctcaaaagcctcttgtgact
acaaggtctatggagtatctacgattccgagagttgccagcaggcatcaactcaattgtg
gctattgcatcatacactggatataatcaagaagattctgttatcatgaaccgctctgct
gtggatagaggctttttcaggtcagttttttatcggtcttacaaagaacaagaatctaag
aaaggatttgaccaagaagaggtctttgaaaaaccaacacgtgaaacatgccagggtatg
aggcatgctatctatgacaaattggatgatgatggcttaatagctcctggtgtccgtgta
tcaggagatgatgttattattggcaaaacagtaactctgcctgaaaatgaagatgaactg
gagagcactaatagacgttataccaagagagattgtagtacctttctcagaactagtgag
actggcattgtggatcaagtgatggtgactctaaaccaggaagggtataagttttgcaaa
ataagggtacgttctgttagaattccacagattggagacaaatttgcaagtcggcatggt
caaaagggtacctgtggtatccagtacaggcaagaggatatgcctttcacctgtgaaggt
atcacccctgacatcatcataaacccccatgccatcccttctcgtatgactattggtcac
ttgattgaatgtcttcaagggaaggtatctgctaataaaggtgagattggtgatgccaca
ccatttaatgatgctgtcaacgtgcagaagatttctaatctgctatctgattatggttac
catctcagaggaaatgaggtcctgtacaatggatttactggtcgaaaaatcacatctcaa
atttttattggccccacttattaccaacgtttgaagcatatggtggatgataagatccat
tcccgtgccagagggcctatccagatccttaataggcagcccatggagggcagatctcgt
gatggtggcctgcgttttggagaaatggaacgagactgtcagattgctcatggagcagcc
cagtttctaagggaaagattatttgaagcatcagatccctatcaagttcacgtatgcaat
ctttgtggaataatggcaatagctaacaccaggacacatacttatgagtgcagaggctgt
cgtaataaaactcagatttctttggtacgaatgccctatgcttgtaaactccttttccag
gaattgatgtctatgagtattgcacctcgaatgatgagtgtttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (68)   

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