KEGG   Methanosarcina sp. MTP4: MSMTP_1264
Entry
MSMTP_1264        CDS       T03850                                 
Name
(GenBank) Excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
metm  Methanosarcina sp. MTP4
Pathway
metm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:metm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    MSMTP_1264
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:metm03400]
    MSMTP_1264
DNA repair and recombination proteins [BR:metm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MSMTP_1264
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      MSMTP_1264
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_22 AAA_30 AAA_16 P-loop_SecA DUF87 Kinesin UB2H SWI2_SNF2 ACDC
Other DBs
NCBI-ProteinID: AKB24733
UniProt: A0A0E3NVM4
Position
1621932..1623902
AA seq 656 aa
MTSSSQLAKVSPEPQFKLTSEFSPKGSQPEAIEKLVEGLNKGDRFQTLLGVTGSGKTYTV
ANVINQVRKPTLVVAHNKTLAAQLYNEFREFFPENRVEYFVSYYDYYQPESYLPAKDQYI
EKDASINPKIEQMRLAATASLMSRPDVIVVASVSCIYGLGNPENFQKMGFELKVGDRVSR
KEVLGKLVDILYERNDLELMPGRFRVKGDTIDIIPGYFDNIIRIELFGDEVDRISEIDKQ
TGQRKEDMEYFFIYPARHYVIPEEDQKSAIKDILKELEEHLPTLDLLESHRLKQRTLYDI
EMIEETGSCKGIENYSRHFDHRKPGEKPFCLLDYFPDDFLLVVDESHQTLPQLHGMYKGD
YSRKKSLVDYGFRLPSAFDNRPLRFEETELYMKNVIFVSATPGEYERERSAQVVEQIIRP
TGLVDPEVEVRPLEGQVKDVMEEIRKIVERGDRALVTTLTKKLAEELTDYLARNEIKARY
LHSDIKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDTKSL
IQIIGRAARNASSTVVLYADNMTDSIKRALGETERRRAMQIAYNQKHGIVPKTIRKPIKE
KVVDITATKHIPKSDIPNVIIELETEMREAADRLDFEEAIRLRDMVKKLEKEIKVA
NT seq 1971 nt   +upstreamnt  +downstreamnt
atgacatcgtccagccagctcgcaaaagtctctcccgaaccgcagttcaagcttacatcc
gagttcagtccaaagggctcccagccggaggctatcgaaaagcttgttgaagggctgaat
aaaggagaccggttccagacccttctcggggttaccggttcaggtaagacttacaccgtg
gcaaatgtcataaatcaggtccggaaaccgacccttgtagtagcccacaacaagacgctg
gcggctcagctctataacgaattcagggagtttttcccggaaaaccgggtggagtatttc
gtctcctactacgactactaccagcccgagtcctacctgcctgcaaaggaccagtacatt
gaaaaagacgccagcatcaaccccaagatcgagcagatgaggcttgcagccacagcttcc
cttatgtcccggcccgacgtgattgtggttgcttccgtgtcctgcatatacggtctcggg
aacccggaaaactttcagaaaatggggtttgagctgaaggtaggggacagggtttcgaga
aaagaggtcctgggcaagctcgtcgatatcctgtacgaacgaaacgaccttgaactcatg
cccgggcgcttccgggtaaagggagacaccattgacattatccccgggtactttgacaac
atcataaggatcgaacttttcggggacgaggtagaccggatttccgaaatcgacaagcag
accggccagcgaaaggaagacatggaatatttctttatctatcccgcccggcactacgtc
attcccgaagaggatcagaaaagcgccattaaagacatcctcaaagagctggaagagcac
cttcctaccctggacctccttgagtcccaccgtctgaaacagcgtaccctttatgacatc
gagatgatcgaggagaccgggagctgcaagggcattgaaaactattcccggcacttcgac
caccggaaacccggggaaaaacccttttgtcttctggactatttccccgacgactttctc
ctggttgtcgacgagagccaccagaccctcccccagcttcacgggatgtacaaaggggac
tactcccggaaaaagagccttgtagattacgggttcaggctccccagtgctttcgataac
cggccgctccgcttcgaggaaaccgagctgtacatgaaaaacgtgatcttcgtctcggca
actcccggggaatacgaaagggaacgctcggctcaggtcgtggaacagatcatccgtccc
acgggtcttgtggatcccgaagttgaagtccgtcctctggaaggccaggtcaaagacgtt
atggaagagatcaggaagatcgtggaacggggcgaccgcgccctggttaccaccctgacc
aagaagcttgccgaagagctgactgactaccttgccaggaacgaaatcaaagcccgctac
ctccactcggacatcaagaccatcgagcggaccgagatcatccgggaactccgtctgggc
aagttcgacgtcctggtcgggatcaacctgttgcgggaagggctcgacatccccgaagtg
ggcttcatcggcatcctggacgcggataaggaaggctttctcagggatacaaagagcctg
atccagatcatcggcagggctgcaagaaatgccagctcgacagtggtcctctacgccgac
aacatgaccgattccatcaaaagagctttgggcgagaccgagcgccgccgggccatgcag
atcgcctacaaccagaagcacggcatagtcccgaaaaccataaggaaacccatcaaggaa
aaggtcgtggacatcaccgctacgaagcatatcccgaagtccgacatcccgaacgtgatc
atcgagctggaaacagagatgagggaagcggcggacaggctggactttgaagaagcgatc
cggctaagggacatggtcaagaagctggaaaaagagataaaagtggcttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (23)   

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