KEGG   Methylorubrum extorquens PA1: Mext_0006
Entry
Mext_0006         CDS       T00640                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
mex  Methylorubrum extorquens PA1
Pathway
mex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mext_0006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mex03019]
    Mext_0006
   03400 DNA repair and recombination proteins [BR:mex03400]
    Mext_0006
Enzymes [BR:mex01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Mext_0006
Messenger RNA biogenesis [BR:mex03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Mext_0006
DNA repair and recombination proteins [BR:mex03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Mext_0006
SSDB
Motif
Pfam: RQC DEAD HRDC Helicase_C RecQ_Zn_bind ResIII
Other DBs
NCBI-ProteinID: ABY28435
Position
4936..6783
AA seq 615 aa
MTARLDEARAALKKTFGYDDFRPGQDEVIGAVLDGTDVFAVMPTGSGKSMTYQLPALVDA
GLTVVVSPLIALMHDQVQQMHAFGIEAATLNSTIAETASRETWRKIRSGELRLLFVSPER
LLMDGCMEALRGAGVRRLAVDEAHCVSQWGHDFRPEYREIARAREALGNVQTLALTATAD
AATRAEIAERLFPAGRPPRTFVHSFDRPNIRLTFQPKDNPTRQLERFLRDRRAESGIIYC
SSRKRVEQLADTLKGDGFNALPYHAGLDQVTRARNQDTFLQEDGVVMTATIAFGMGINKP
DVRYVCHSDMPTNIEGYYQEIGRAGRDGLPSDTLTLYGLDDMALRRRQIDEKEISEERRR
VERRKLEAMIALCEGAACRRQSLLGYFGEASERCGRCDLCRGGIALIDGTVAAQKLLSAI
VRTGQRFGAAYVCDVVHGKESESIRRNGHAALKTFGVGNDKPVAAWRALLRQLFAAGAVA
ENTDGYGGLVMTEKGEAILFGRETIEVRPDPEPKKAEPRSRRATPRDDEANALSEADEAL
FQHLRGLRATIARAEGIAAFMVFPDRTLIEMARSKPVDLWALRTVHGVGERKREAYGERF
TDTIREFLADAKRAG
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgacagctcgcctcgacgaggcccgcgccgcgctgaaaaaaaccttcggctacgacgat
ttccgtcccggccaggatgaggtgatcggcgccgtgctcgacggaacggacgtgttcgcg
gtgatgccgacgggctcgggcaagtcgatgacctaccaattgccggccctggtcgatgcc
gggctcaccgtcgtggtctcgccgctgatcgcgctgatgcacgatcaggtgcagcagatg
cacgccttcggcatcgaggcggcgaccctcaactcgacgatcgcggagacggcgtcgcgg
gagacgtggcgcaagatccgctccggcgagctgcgcctgctgttcgtttcgccggaacgt
ctgctgatggacggctgcatggaggccctgcgtggggccggcgtgcggcggctcgcggtg
gacgaggcgcactgcgtctcgcaatggggccacgatttccgccccgaataccgcgagatc
gcccgcgcccgcgaggcgctcggcaacgtgcagaccctggcgctcaccgccaccgccgac
gccgcgacccgcgccgagatcgccgagcggctgtttccggcggggcggcccccgagaacc
ttcgtccactccttcgaccggcccaatatccggctgaccttccagcccaaggacaacccg
acccgccagttggagcgcttcctgcgtgaccgccgcgcggagagcggcatcatctactgc
tcctcgcgcaagcgggtggaacagctcgccgacacgctcaagggggacggcttcaacgcc
ctgccctatcatgccgggctcgatcaggtcacgcgggcgaggaaccaagacaccttcctg
caggaggacggcgtggtgatgaccgccacgatcgccttcggcatgggcatcaacaagccg
gatgtgcgctacgtctgccactccgacatgccgaccaacatcgagggctactatcaggag
atcggccgcgccggccgcgacgggctgccctccgacaccctgaccctctacggcctcgac
gacatggcgctgcgccgccgccagatcgacgagaaggaaatctcagaggagcgccgccgg
gtcgagcggcgcaagctcgaggcgatgatcgctctgtgcgagggcgctgcctgccgccgc
cagtcgctgctcggctatttcggcgaggcgagcgagcgctgcgggcgctgcgatctctgc
cgcggcggcatcgccctcatcgacgggacggtggcagcccaaaagctgctctccgccatc
gtccgcaccgggcagcgcttcggcgcggcttatgtctgcgacgtggtgcatggcaaggag
agcgaatccatccgtcgtaacggccatgctgcgctcaagactttcggtgtcggcaacgac
aagccggtggcggcgtggcgcgccctgctgcgccagctcttcgcggccggagcggtggcc
gagaacaccgacggctatggcggcctcgtgatgaccgagaagggcgaggccattctgttc
ggccgtgaaacgatcgaggtcaggcccgatccggagccgaagaaggccgagccgaggagc
cgccgtgccacgccgcgcgacgacgaggcgaatgcgctgagcgaggcggacgaagcgctg
ttccagcacctgcggggccttcgcgccaccatcgcgcgggcggaaggcatcgccgccttc
atggtgttccccgaccgcaccctgatcgagatggcgcgctcaaaacccgtcgatctctgg
gcgctccgaaccgtccatggcgtcggcgagcgcaagcgcgaggcctatggcgagcgcttc
accgacacgatccgtgaattcctggccgacgcgaagcgcgccggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

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