KEGG   Martelella endophytica: TM49_02180
Entry
TM49_02180        CDS       T03801                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
mey  Martelella endophytica
Pathway
mey03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mey00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TM49_02180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mey03019]
    TM49_02180
Enzymes [BR:mey01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     TM49_02180
Messenger RNA biogenesis [BR:mey03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     TM49_02180
SSDB
Motif
Pfam: DEAD Helicase_C ResIII HEM4 Helicase_RecD AAA_19 CMS1 ERCC3_RAD25_C UTP25
Other DBs
NCBI-ProteinID: AJY47863
UniProt: A0A0D5LWT9
Position
470352..471716
AA seq 454 aa
MTDFSTLGLSGPLVARIANEGYEKPTPIQEKAIPLVLEGRDLMGLAQTGTGKTAAFGLPI
IDMLLANSGKPTPKSVKTLILAPTRELVNQIAENLRIFARKTPLRVSIVVGGASINRQQQ
QLAGGTDILVATPGRLLDLLDRRALYLDKVRYLVLDEADQMLDLGFIHDLKKIASLVPDD
RQTMLFSATMPKSIADLSHRFLSNPERVEVTPPGKTADKVDQAVHFVAGKGDKVEILRRE
LSDNPDGRAIVFLRTKHGAEKLMKHLESRGFATASIHGNKSQGQRERALKAFKTGEINVL
VATDVAARGIDVPGVTHVYNYDLPEVADAYVHRIGRTARAGKDGKAIAFCTPEEAGLLRD
IQKLTGIEIAIASGEPHAMADRPSRGRGQNRGGQNRGRGNGNGNGGKPARRARPQGGGDG
RHGEARNDGGRPAGAKGRPQRRQRNRQGDRRQSA
NT seq 1365 nt   +upstreamnt  +downstreamnt
ttgacagatttttcgaccctcggtctctccggcccgctcgtcgcccgtatcgcaaacgaa
ggctatgaaaagccgaccccgatccaggaaaaggcgatcccgctggtgctggaaggccgc
gacctgatgggcctggcccagacgggcaccggcaagacggccgccttcggcctgccgatc
atcgacatgctgcttgccaattccggcaagccgacgccgaagagcgtcaagacgctgatt
ctcgcccccacccgcgaactggtgaaccagattgcggaaaaccttcgcatcttcgcacgc
aagacgccgctgcgcgtctcgatcgtcgttggcggcgcctccatcaaccgtcagcagcag
cagcttgccggcggcaccgacattctggtcgccactcccggccgcctgctcgacctgctc
gaccgtcgcgcgctctacctcgacaaggtgcgttacctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgacctgaagaagatcgcttcgctcgtcccggatgat
cgccagaccatgctgttttcggcaaccatgccgaaatcgatcgccgacctgtcgcatcgc
ttcctcagcaatccggaacgcgtcgaggtgacgccgcccggcaagacggccgacaaggtg
gaccaggccgtacacttcgttgccggcaagggcgacaaggtcgagatcctgcgtcgcgag
ctttccgataatcccgatggccgcgctatcgtgttcctgcgcaccaagcacggcgccgag
aagctgatgaagcatctcgaaagccgcggcttcgccaccgcctcgatccatggcaacaag
agccagggtcaacgcgagcgggcgctgaaggcgttcaagaccggcgagatcaacgtgctt
gtcgccaccgacgttgccgctcgcggcatcgacgtccccggcgtcacccacgtctacaac
tacgacctgccggaagtcgccgacgcctatgtgcaccgcatcggccgtaccgcccgcgcc
ggcaaagacggcaaggcgatcgccttctgcacgccggaagaagccggcctgctgcgcgat
atccagaagctcaccggcatcgagatcgcgattgcgtccggcgaaccgcatgcgatggcc
gatcggccatcgcgcggtcgtggccagaaccgcggcggccagaaccgcggtcgcggcaat
ggcaacggcaacggcggcaagcccgcgcgccgcgcccggccgcaaggcggtggcgacggc
cgccatggcgaggcccgcaacgacggcggccgcccggccggcgccaagggccgtccgcag
cgccgccagcgcaaccgtcagggcgaccgccgccagagcgcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (41)   

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