KEGG   Mycoplasmopsis fermentans PG18: MBIO_0406
Entry
MBIO_0406         CDS       T02594                                 
Name
(GenBank) hypothetical protein
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mfp  Mycoplasmopsis fermentans PG18
Pathway
mfp03030  DNA replication
mfp03410  Base excision repair
mfp03420  Nucleotide excision repair
mfp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MBIO_0406
   03410 Base excision repair
    MBIO_0406
   03420 Nucleotide excision repair
    MBIO_0406
   03430 Mismatch repair
    MBIO_0406
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfp03032]
    MBIO_0406
   03400 DNA repair and recombination proteins [BR:mfp03400]
    MBIO_0406
Enzymes [BR:mfp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MBIO_0406
DNA replication proteins [BR:mfp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MBIO_0406
DNA repair and recombination proteins [BR:mfp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MBIO_0406
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MBIO_0406
   MMR (mismatch excision repair)
    DNA ligase
     MBIO_0406
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MBIO_0406
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH_5 TPR_18 zf-ribbon_3
Other DBs
NCBI-GeneID: 15167637
NCBI-ProteinID: BAH69671
UniProt: C4XEU9
Position
455971..457965
AA seq 664 aa
MRRAMNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIY
VNSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIEDINFSIEPK
IDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIPKIINYDAELEVRGEVFLPK
AEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKHNITTQ
EQALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKNKLNYDADGLVIKLNNLTYWNKM
GKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVRAATLHN
YNFIEDLNININDQVQIVKAGEIIPKVLALVKKQSKGVFGKTLECPSCGSVLVEIEDNVD
QFCVNKNCPEMTINAIYHFASRKSLNIVGLGLITVKDFYKHNLVKSIEDIFNLHKHKDEL
LKLERYAELKVNNLLTNIGKAKDSTFSKVLFALGIKHVGERAAKLISKQYHNFDELICEK
DELAKISAINNIGPKILDSLKEYLKNEENVKLLRKFDEIFNYQKIATVASEKLINLSFVI
TGKLSNSRDHYVDLVEANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFN
EMLK
NT seq 1995 nt   +upstreamnt  +downstreamnt
ataaggagagctatgaatgctttagatattaaaaagaaaattattgaattaagtaataaa
ttaaaccaatgaaataaagaatattatcaagataataatcctagtgttagcgattttgaa
tatgataaagctttacaagaattagaacaattagaaaaaaaatatcctcaatttatttat
gttaatagtcctactcaaaaattaggatcttttgctgataataaatttaaaaaagtagtt
catcaaaaaccaatgctttctttatctaaagcatatgactatagtgaaattgaaaaatat
gtcaataatattgaaaaattagttccaattgaagacatcaatttttcaattgagcctaaa
attgatggtctttcaatttcacttcattataatcatggcttcttaaaccaagctttaaca
agaggtgatggtcatgagggtgaagatgtaactgaaaatatttatcaaatagcttcaata
ccaaaaataattaattatgatgctgaattagaagttagaggtgaagtatttttacctaaa
gctgagtttcaaagattaaatgaaaatttaattaaagcaggcgaaaaacctttttcaaat
ccaagaaatgcagcaagtgggactttaagacaattagatcctactattgttaaaaataga
caacttgcttcctttttatatgaattagttgagcctcaaaaacataatattaccactcaa
gaacaagctttagaattctttcaaaaattaaatatacccactaatccatatcataaagta
gttgaagttgaagaattggaagaagcaattagtttttttgctgaaatgaaaaataaactc
aattatgatgctgatggtttagtaattaagctaaataatttaacctattgaaataaaatg
ggtaaaactgctaagtttccaaaacattcaattgcttttaaatatgaagttgaaacagca
attagtactattaaagatattaaaaccacagtgggtcgtactggcaaaattacttatgtt
gcaagtttagaacccgttgaattaaatcaaacaatagttagagcagcaactcttcataat
tataattttattgaagacttaaacattaacattaatgatcaagttcaaatagttaaggct
ggtgaaataattcctaaagttttagctttagttaaaaaacagtctaaaggtgtttttggt
aaaactttagaatgtccttcttgtggcagtgtattagtcgaaattgaagataatgttgat
caattttgtgttaacaaaaattgtcctgaaatgacaattaatgcaatttatcactttgct
tcaagaaaatcgttaaatattgtaggtttaggattaatcacagttaaagatttctataaa
cacaatttagttaaaagcattgaagatatttttaatttacataaacataaagatgaatta
ttaaaacttgaacgttatgcagagttaaaagttaacaatttattaactaatattggaaaa
gcaaaagactcgacttttagtaaggttttatttgctcttggtattaaacatgtgggtgaa
agagctgcaaaattaatttcaaaacaatatcataattttgacgaattaatttgtgaaaaa
gatgaattggcaaaaatatcagctataaataatattggtcctaaaattttagatagctta
aaagaatatctaaaaaatgaagaaaatgttaaacttttaagaaaatttgatgagatattt
aattatcaaaaaattgctacagttgctagtgaaaaattaattaatttatcatttgttatc
acaggtaaattatcaaactcaagggatcactatgttgatttagttgaagctaatggaggc
aaagtatcttcatcagtttcttctaaaacgtcatttcttttagtaggagaagatgcaggt
agcaaattagataaagctaaaaaattaaatattgcaataataaatgaagaacaatttaat
gaaatgttaaaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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