KEGG   Corallococcus macrosporus HW-1: LILAB_35660
Entry
LILAB_35660       CDS       T01558                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mfu  Corallococcus macrosporus HW-1
Pathway
mfu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mfu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LILAB_35660 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mfu03021]
    LILAB_35660 (rho)
   03019 Messenger RNA biogenesis [BR:mfu03019]
    LILAB_35660 (rho)
Transcription machinery [BR:mfu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LILAB_35660 (rho)
Messenger RNA biogenesis [BR:mfu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LILAB_35660 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N Spore_III_AA AAA_25 NACHT AAA_22 OB_RNB ATPase_2
Other DBs
NCBI-ProteinID: AEI69013
UniProt: F8CLX7
Position
complement(8767063..8768325)
AA seq 420 aa
MQVIKLNDLKRMKITDLSKMAHDVGIEGYQGLKKQDLIFALLGGIADKRFEVHAEGVMEL
LSDGFGFLRSADSDYQPSPDDIYVSPSQVRRFNLRPGDTVTGPIRQPREGERFFALQKVD
KVNFADPMSDAARERILFDNLTPLYPTRKLKLEHESSEMTTRIIDMFCPIGLGQRCLIVA
PPKAGKTVLLQNIAHAISRNHPDVYLIVLLVDERPEEVTDMERNVRGEVVSSTFDEPATR
HVQVAEMVIDKAKRLVEQKYDVCILLDSITRLARAYNTVVPASGKILSGGVDANALHKPK
RFFGAARNIEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKLMEKRIFPTL
DINKSGTRKEELLLGPGDLVRITALRQVLHPFTPIDAMEFVLKHMRPTASNADFLGSMNR
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgcaggtcatcaagctcaatgacctgaagcggatgaagatcaccgacctctcgaagatg
gcccacgacgtgggcatcgaggggtaccagggcctgaagaagcaggacctcatcttcgcg
ctgctgggcggcatcgccgacaagcgcttcgaggtccacgcggaaggcgtgatggagctg
ctcagcgacggcttcggcttcctgcgcagcgcggacagcgactaccagcccagcccggac
gacatctacgtgtccccgtcgcaggtgcgccgcttcaacctgcgccccggcgacacggtg
acgggccccatccgccagccccgcgagggcgagcgcttcttcgcgctccagaaggtggac
aaggtcaacttcgcggacccgatgtcggacgcggcgcgcgagcgcatcctgttcgacaac
ctcacgccgctctatccgacgcgcaagctcaagctggagcacgagtcgtcggagatgacc
acgcgcatcatcgacatgttctgccccatcggcctgggccagcgctgcctcatcgtggcg
ccgccgaaggccggcaagacggtgctgctgcagaacatcgcgcacgccatcagccgcaac
cacccggacgtctacctcatcgtgctgctcgtggatgagcgcccggaagaggtgacggac
atggagcgcaacgtgcgcggcgaggtggtgtcctccaccttcgacgagcccgccacgcgc
cacgtgcaggtggcggagatggtcatcgacaaggccaagcgcctggtcgaacagaagtac
gacgtctgcatcctgctggactccatcacccgtctggcgcgcgcctacaacacggtggtg
ccagcgtccggcaagattctgtccggcggcgtggacgccaacgcgctccacaagcccaag
cgcttcttcggcgccgcgcgcaacatcgaggagggcggctcgctgaccatcatcggcacc
gcgctcatcgacaccggcagccgcatggacgaggtcatcttcgaggagttcaagggcacg
ggtaactccgaaatcgtcctggaccggaagctgatggagaagcgcatcttcccgacgctg
gacatcaacaagtccggcacgcgcaaggaagagctgctgctgggcccgggcgacctggtg
cgcatcaccgccctgcggcaggtgctccacccgttcaccccgattgacgcgatggagttc
gtgctcaaacacatgcggcccaccgcgtcgaatgcggacttcctcggctcgatgaaccgg
tag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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