KEGG   Mycoplasmoides genitalium G37: MG_104
Entry
MG_104            CDS       T00002                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mge  Mycoplasmoides genitalium G37
Pathway
mge03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mge00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MG_104
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mge03019]
    MG_104
   03016 Transfer RNA biogenesis [BR:mge03016]
    MG_104
Enzymes [BR:mge01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     MG_104
Messenger RNA biogenesis [BR:mge03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MG_104
Transfer RNA biogenesis [BR:mge03016]
 Prokaryotic type
  tRNA degradation factors
   MG_104
SSDB
Motif
Pfam: RNB S1 CSD2 Importin_rep MOLO1 DUF5053
Other DBs
NCBI-ProteinID: AAC71322
UniProt: P47350
Structure
Position
131385..133562
AA seq 725 aa
MKVLTELQKQIFTIVKKENGKPIPPGIVVRMMENSPNFPGKHLIYRAIDDLLDWAILRKA
GGVTNQLLVNYEPAEPLLDKKLQGILTLGNKNSGFIRSLDDDKTVYYVHYSNLTGALDGD
LVEFCKLDKPQFGDKFDAAVITILKRARILYAGNFLVDQNEFALEYKIVADNPRFYLTMI
VNPDSIPNNLASNTKIAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNSIVFE
TNDVVEQHANKLSFDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIPTGFVLYV
AIADVAHYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQKRYVVVCE
ISFDNQGRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDETVINSLKAAFTLSDLI
QAQRQKRGTIDLSHKETEIVVDEHYFPIKINFLVHDKAETMIENLMVVANETVAWVLTNN
KIALPYRVHPRPSKKKLQSLIETVGELNITKPQFNLDTVTSSQIASWLNENKDNPSYEIF
VILLLRTLGKAFYSVNPLMHFSIGSNHYTHFTSPIRRYIDLTIHRLLWMHLFTPDQFTDN
ERDQLKQELEKIADTVNDTEIKIINCERNANDYLTTLLLSKQIGKTFSGFISAITSFGIF
MRMDENNFDGLIKITTIPDDFFIFEKEKMVLKGRKTNKVYKIGDRLEAKLSEIDFIQKRA
ILTLI
NT seq 2178 nt   +upstreamnt  +downstreamnt
atgaaggttttaactgaactccaaaagcagatatttaccattgtcaaaaaggaaaatggt
aaacctattccccctggaatagtggtaagaatgatggaaaatagtcctaattttccaggt
aaacatctcatctatcgggccattgatgatctgcttgattgagccatcttaaggaaagct
ggtggggttacaaaccagctattagttaactatgaacctgctgagcctttacttgataaa
aaactacaagggattttaaccttaggaaataagaatagtggttttatccgctctttggat
gatgataaaactgtgtattatgtccattactctaatttaactggagctttagatggggat
cttgtggagttttgtaaattagataaaccccaatttggtgataagtttgatgctgcagtt
attactattctaaaaagagcaagaatcttgtatgcaggtaattttttagtagatcaaaat
gagtttgccttggaatacaaaattgttgctgataaccctagattttatttaactatgatt
gtaaatcctgattctatcccaaataacttagcatctaacaccaagatagcttttcaaatt
gatgagtatgatcctgataacaacttatgtaaggtttctgtacaacaagttttgggtaac
aatgatgatccgctaattaatataaaagcaatcatgttggacaattccattgtctttgaa
actaacgatgtagttgaacagcatgctaacaagttaagttttgatactgaagaacaacat
aaagcttaccgtcaggatttaactgatttagcttttgtgactgttgatcctacaacatca
aaagaccttgatgatgctatttatgtcaaaacaataccaacaggttttgtgctttatgta
gctattgctgatgttgcacactatgttaatagaaatagtgaaatagacattgaagcaaaa
cacaaaacaagctcaatctatctacctggtcattatgttgtgcccatgctacctgagcaa
ttgtcaaatcagctctgttctttaaatccagcacaaaaacgttatgttgttgtttgtgag
attagttttgataatcagggaaggattaaaacaaacaagctttacccagcaacaattatt
tccaaaaatcgttttagctatgatcaggttaacaagtggttaaataataaatcagaatta
aactgtgatgaaacagttatcaacagcttaaaagcagcttttacactaagtgatctaatt
caagcgcaacgtcaaaaacgcggtacaattgatctttcacacaaagaaactgagatagtt
gttgatgaacattattttcccattaagataaattttttggttcacgataaagctgaaacc
atgattgaaaatctcatggtagtggccaatgagacagttgcttgggtgttaactaacaac
aaaattgctttaccatacagagttcacccaagaccaagcaaaaagaagttacaaagtttg
attgaaacagttggtgagttgaacataactaaaccccaatttaacttagatactgtcact
tcaagccaaatagctagctgattaaatgaaaacaaagataatcctagttatgagatcttt
gtaatcctcttattaagaacactaggcaaagctttttatagtgttaatcccctgatgcac
ttcagcattggttctaaccactatacccactttacttcaccgattagaaggtatatagat
ctaaccattcacaggttgttgtgaatgcatctttttactcccgatcaattcactgataat
gaaagagatcaactcaaacaagagttggaaaaaattgctgatacagttaatgatacagag
attaaaattatcaattgtgaaagaaatgccaatgattatctaacaacgctgttattatca
aaacaaattggcaaaaccttcagcggatttatttcagcaattactagctttggaattttt
atgagaatggatgaaaataactttgatgggttaatcaaaattacaactatccctgatgat
ttctttatttttgaaaaggaaaaaatggtattgaaaggaagaaaaactaataaggtttat
aaaattggcgatcgtttggaagctaaactaagtgagattgatttcatccaaaaacgtgct
attttaacactcatataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
3D Structure (4)   
   PDB (4)   
Protein domain (6)   
   Pfam (6)   
All databases (36)   

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