KEGG   Marinobacter nauticus ATCC 49840: MARHY0852
Entry
MARHY0852         CDS       T02083                                 
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mhc  Marinobacter nauticus ATCC 49840
Pathway
mhc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mhc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MARHY0852 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mhc03019]
    MARHY0852 (rnr)
   03016 Transfer RNA biogenesis [BR:mhc03016]
    MARHY0852 (rnr)
Enzymes [BR:mhc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     MARHY0852 (rnr)
Messenger RNA biogenesis [BR:mhc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MARHY0852 (rnr)
Transfer RNA biogenesis [BR:mhc03016]
 Prokaryotic type
  tRNA degradation factors
   MARHY0852 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 OB_Dis3 CSD
Other DBs
NCBI-ProteinID: CCG94334
UniProt: H8W6B8
Position
889275..891722
AA seq 815 aa
MVSRKNKQSDPHAQREAQKYDNPIQSREYILQHLKERGAPATHETLCQELGQTSAEGIEA
LRRRLIAMCRDGQLICNRRDAFLPIEEADLVTGRVVGHRDGFGFLIPDDGGSDLFLTARQ
MRQVFHGDRVAARVDQVDDRGRREGKIVEVLEHRTSQIVGRFFKESGIAFVVPENARINH
EILVPDEQAGKAVHGQYVVVEIIRQPTIRTQPTGQVIEILGEHMAPGMEIDVAIRSYEIP
HSWPPAVGEQAASIPAEVAEKDKANRVDIRNMRLVTIDDESARDFDDAIYCEPRPRGGYR
LVVAIADVSHYVRPGSPLDEEAIQRGNSVYFPDHVVPMLPEKLSNGLCSLNPDVDRLCMV
ADMTISAAGNISGYTFYQAVMRSHARLTYNKVSAMLEHPDTEQGYKLSAHYADLLPHLHN
LYDLYKLLRKARTERGAIDFETTETKIVFDAQRKIEEIVPVHRNDAHKIVEECMLCANVA
TARFLKKHKIPALYRVHDGPSEERLSNLRLFLGELGLQLGGGDKPSSADYQALLGQVADR
PDANVIQMVMLRSLSQAVYSPEEAGHFGLGFASYTHFTSPIRRYPDLIVHRAIKSRIHNP
EATKDLVSPKVHDPELAEYPYDYARMEQLGEHCSMTERRADDATRDVMAWLKCEFLRDHV
GEEYDGIIGAVVPFGFFVELSDIYIEGLVHVSTLSGDYFHHDAVKHRLIGERTAVSFRLG
DEVRVRVVRVDLEDRKIDLELVSTPRRRKADRDALEVSKREPRGKGKGGRSGKGQKSGKP
ASAKEKLAAEAAREARSKSAKGKPSGSGRKRKSRK
NT seq 2448 nt   +upstreamnt  +downstreamnt
atggtttccaggaagaacaaacaaagtgaccctcatgcccagcgtgaggcccagaaatat
gacaaccccatccagagtcgggagtacattctccaacatctgaaagagcggggcgcgccg
gccacgcacgagaccctgtgtcaggagctcgggcagacgtctgcggaaggaattgaagcg
ttgcgccgtcgtctgattgcgatgtgccgtgatggacagttgatctgtaaccgccgtgat
gcgttcctgccgatcgaggaagcggatctggtcaccgggcgtgtggttggacatcgtgat
ggtttcgggtttctgatccccgatgacggtggctccgacctgtttctgactgcccggcag
atgcgccaggtattccacggtgaccgggtagccgcccgggtggatcaggtggatgatcgc
gggcgccgggaaggcaagattgtagaagtgctggagcatcgcacctcccagatcgtcggt
cgcttttttaaagaaagcggcatcgccttcgtagtgccagagaacgccagaatcaatcac
gagatactggttccggatgagcaggctggtaaggcggttcacggccagtatgttgtggtg
gaaatcattcgtcagccgacgattcgaacccagcccaccggccaggttatcgagattctg
ggcgagcacatggcgccgggaatggaaatcgatgtggccattcgttcctacgaaatcccg
catagctggccgcccgcggtcggtgagcaggccgcctcgattcccgcggaagtggcagag
aaagacaaggcaaaccgggtggatatccgcaacatgcgcctggtgaccatcgacgacgag
agcgctcgtgacttcgatgatgccatttactgcgagcctcgtccccgtggtggctatcgg
ttggtggtggccatcgctgatgtctcccattatgtccgcccggggtcgccactggatgaa
gaggccattcagcgcggtaactcggtgtattttccggaccacgtggtgcccatgctgccg
gagaagctctccaatggcctgtgttccctgaacccggatgtcgaccgtctgtgcatggtg
gccgacatgaccatcagtgccgccggtaacatcagcggctacaccttctatcaggccgta
atgcgcagccatgcccggctgacctacaacaaggtcagtgccatgctggagcatccggat
acggagcagggctacaaactcagcgcccactatgcggatctgctgccacatctgcacaac
ctgtatgacctctacaagttgttgcgaaaggctcgcaccgagcgtggggccattgatttc
gagaccacggaaaccaagattgttttcgatgcccagcgcaagattgaggaaattgttccg
gtgcaccggaacgatgcccacaagattgtcgaagagtgcatgctgtgcgccaatgtggcg
acggcccgcttcctcaagaagcacaagattccggcgctttaccgggtgcacgacgggcct
tcggaagagcgtctgagcaatctgcgcctgttcctgggtgagctgggattgcagctgggc
ggcggcgacaagccgtcatcggcagattaccaggccttgctgggtcaggtggccgaccgc
ccggatgccaatgtcatccagatggtgatgctgcgctctctgagccaggcggtgtacagt
cctgaggaagccgggcattttggtcttggcttcgccagttatacccacttcacgtcgcca
attcgacgttacccggacctgattgtgcatcgggccatcaagtcccggatccataatccc
gaggcaaccaaagatctggtgtccccgaaggtgcacgatcccgaattggctgagtatccc
tacgattatgcccgtatggagcagttgggtgagcattgctccatgaccgaacgccgggcc
gacgatgccacacgggatgtcatggcctggctcaagtgcgagttcctgcgcgatcacgtg
ggcgaggagtacgatggcattatcggcgcggtggtgccgtttggcttctttgttgagttg
tccgatatctacatcgaaggtctggtacacgtctccacgctcagtggtgactacttccat
cacgatgccgtcaagcatcgtctgattggtgagcgcacggcggtcagcttccgtctgggt
gacgaagtgcgtgtccgcgtggtgcgtgtcgatctggaagaccgaaaaatcgatcttgag
ctggtaagcacccccaggcgccggaaggcagaccgcgatgcgctggaagtgtccaagcgc
gagccgcggggcaagggcaagggtggtcgctccggtaaagggcaaaaatccggtaagccg
gccagcgccaaggaaaagctggccgcagaggctgcccgggaggcccggtccaaatcggcc
aaaggtaaaccgtcaggctcgggccgtaagcgcaagagtcgcaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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