KEGG T02523: D650

Mannheimia haemolytica USDA-ARS-USMARC-183: D650_5140

Entry

D650_5140         CDS       T02523

Symbol

rnr

Name

(GenBank) ribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

mhq Mannheimia haemolytica USDA-ARS-USMARC-183

Pathway

mhq03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:mhq00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D650_5140 (rnr)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mhq03019]
    D650_5140 (rnr)
   03016 Transfer RNA biogenesis [BR:mhq03016]
    D650_5140 (rnr)
Enzymes [BR:mhq01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     D650_5140 (rnr)
Messenger RNA biogenesis [BR:mhq03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     D650_5140 (rnr)
Transfer RNA biogenesis [BR:mhq03016]
Prokaryotic type
  tRNA degradation factors
   D650_5140 (rnr)

SSDB

Motif

Pfam:

RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind

Other DBs

NCBI-ProteinID:

AGI31784

Position

complement(501009..503372)

AA seq 787 aa
MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAFHIDDEERMEGIRRRLR
AMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVEGHEKGATKSEDWFIPNAQ
MVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVGRFFLESGIGFVVPDDSRVNQ
DILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITEILGDNLAPGMEIEIALRNHDIP
HIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLITIDGEDARDFDDAVFAKKEGNGWR
LWVAIADVSYYVRPKTALDLEALNRGNSVYFPNRVVPMLPEVLSNGLCSLNPQVDRLCLV
AEMSVSSKGELQDYQFYEAVMNSHARLTYTKVWKMLEGDEALRERYAPLVPHIEELYAMF
QTLMKARHKRGAIEFETIENQFIFNPQGRIERIEPLIRNDAHKLIEECMILANIAAARFV
EKANEPALYRIHDKPSEEKLLSFKSFVRECGLTWDVGLDPTPKDYGVLLEQIAERADKEL
IQTMLLRSLKQAVYAADNIGHFGLALTEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTR
YYTDGGGYHYKLDDMDEFGDKCSATERRADEATREVADWLKCEFMQDHLGEEFDGVISSV
TGFGLFVKLNELLIDGLVHISTLDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNL
DEKKIDFELLTGNKKTGKTAKKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTT
ASKSRKK

NT seq 2364 nt +upstreamnt +downstreamnt
atgatagtcgatccgaattatcagcaagaattagaaaaatacgaaaatccggtaccaagc
cgagagtttattttaaatacaattcgtgaacataacgccccaatgagccgtgatgaatta
ttgtcggcttttcatattgacgatgaagaacgaatggaaggcattcgccgccgtctgcgt
gcaatggaaaatgacggtgaattggtgttcaccaaaggcaaacgctatgcgttgccggaa
aaaatggatttaatcaaaggtacagttatcggccatcgtgacggttacggttttttgcaa
gtggaaggacacgaaaaaggggcgactaaaagcgaagattggtttattcccaacgcccaa
atggtaaaggtaatgcacggtgactttgtgctggcacaaccaaacggcacagaccgcaga
ggtcggaaagaagtccgcattgtgcgagtgttggaggcccgtaagaaacagattgtcggg
cgttttttccttgaaagcggtatcggttttgttgtgcctgatgacagccgcgttaaccaa
gatattctcattccggatgaacaccgtatgggggcgagaatggggcaagttgtggtggtg
gaattacaggaaagaaaagcgagttttagccgcccggtgggaatcattactgaaattcta
ggcgataatttagcgccgggaatggaaattgaaattgccctacgcaatcacgatattccg
cacatttggccggaaggggtagaaaaacaaatccgccaatttagtagcgaagaagtgccg
gaagaagccaagcaagggcgggtggatttgcgagatctgccactgattaccattgacggc
gaagatgcccgagatttcgatgatgctgtatttgccaaaaaagagggcaacggctggcgg
ttatgggtggcgattgccgatgtaagttattatgttcgcccaaaaaccgcattagatttg
gaagccctaaatcgtggtaactcggtctatttcccgaatcgggttgtgccaatgttgccg
gaagtgctttccaatggcttgtgttcactcaatccacaggttgacaggctctgcttggtg
gcggaaatgtcggtttccagcaaaggggaattacaagattatcaattctacgaagcggta
atgaactctcacgcccgtttaacttacactaaagtgtggaaaatgttggaaggtgatgaa
gccttgcgtgaacgctatgctccattagtgccgcatattgaagaactctatgcaatgttc
caaaccttaatgaaagctcgccataaacgaggggcgattgaatttgaaaccattgaaaat
caatttattttcaatccgcaagggcgaattgagcgaattgagccgttaatccgcaacgat
gctcataaattgattgaagaatgtatgattttagccaatattgctgccgctcgttttgtg
gaaaaagcgaacgaaccggcgttatatcggattcacgataagccgagtgaagaaaaattg
ctcagttttaaatcctttgtgcgtgagtgtggcttaacctgggacgtaggcttagatcca
accccaaaagattacggtgtactactggagcaaattgccgaacgtgccgataaagagttg
attcaaacgatgttgctccgctcgctgaaacaagcagtgtatgcggcggataatatcggg
catttcggcttggcattaaccgaatatgctcattttacctcgccgattcgccgttacccg
gatttactgttacaccgtgcaattaaatatctgatcgaaaaaggcaaaggcaacactcgc
tactataccgatggcggtggttatcactacaagttagatgatatggacgaattcggcgat
aaatgttctgccaccgaacgccgagctgatgaggcaacccgagaagtggcagattggctg
aaatgcgaatttatgcaagatcatcttggcgaagagtttgatggcgtgatttcgagtgtt
accggctttggcttatttgtaaaactcaatgagcttttaattgacggattggttcatatt
tcaacgctggataatgattattaccactatgatgcggaccgacaacgtttaatcggtggc
agtgggatcatctatcgtttaggcgatgcagttagagtaaaagtaatcaatgtgaattta
gacgagaaaaaaattgattttgagttactcaccggtaataagaaaaccggcaaaaccgcc
aagaaaaaagcaaaagcgacagaggttcctgttttcaaagagcctaaaacggtaaaaaaa
gccaaaaaagtcgctgagaaaaaaccggcaaaatctgcaaaaaaacggacaaaaacgacc
gctagtaaatcaaggaaaaaatag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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