KEGG   Methylomonas koyamae: MKLM6_1434
Entry
MKLM6_1434        CDS       T05118                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
mko  Methylomonas koyamae
Brite
KEGG Orthology (KO) [BR:mko00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mko03016]
    MKLM6_1434
Enzymes [BR:mko01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     MKLM6_1434
Transfer RNA biogenesis [BR:mko03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    MKLM6_1434
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C HTH_11 CFAP141
Other DBs
NCBI-ProteinID: ATG89685
UniProt: A0A291IH38
Position
1553705..1554853
AA seq 382 aa
MSIQYIDSPDQIENLCRQIANEPWIALDTEFLREKTYYPKFCLLQIAAPGWVACVDPLAI
TDLSALFEAIYQPNIVKVLHSCRQDLEIFYQITGKIPGPIFDTQIAAPLLGFQENPGYAM
LVSSFLNVNLSKAHTRTDWSERPLSADQIQYAADDVIYLCQIYTAMCEQLAALGRLHWLE
SDFALLNNPELYQLSPENAWLKIRGKNKLTGKQLSIMQSLSEWRERSAQQENKPRNWLMQ
DDMLLELAKLQPVTLAELAKIRNINERTVNRYGKALCALVEEARQRPPKPMAGKENAVKK
NQQHEAILDVLSAVVRIRAEENSLNPVILASRKDLEQLLFGDEDCLLLHGWRYNMAGREL
QGLLQGDYSLSLKPEGVVISAA
NT seq 1149 nt   +upstreamnt  +downstreamnt
atgtccatccaatatatcgatagccccgaccaaattgaaaacctctgccggcagattgcc
aacgagccttggatcgctctggataccgagtttctccgcgaaaaaacctactaccccaaa
ttctgcctgctgcaaatcgccgcgccgggttgggtggcttgtgtcgatccgttggccata
accgatttgagcgcgctgttcgaggcgatttaccaaccgaatatcgtcaaggtgctgcat
tcctgccgccaggatctggagattttttaccagatcaccggcaagattccggggccgatc
ttcgatacccagattgccgcaccgctgctgggctttcaggaaaaccccggttacgccatg
ctggtttccagctttttgaacgtcaacttaagcaaggcgcatacccgcaccgattggtcg
gagcggccgttgagcgccgaccaaatccaatacgccgccgacgacgtgatttatctgtgc
cagatttatacggcaatgtgcgagcaattggcggcgctgggccgcttgcattggctggag
agcgacttcgccttgttgaataatccggagctataccaattgtcgccggagaatgcctgg
ttgaaaatccgcggcaaaaacaagctgaccggcaagcaattgtcgatcatgcaaagcttg
agcgaatggcgcgagcgcagcgcgcagcaggaaaacaagccgcgcaactggttgatgcag
gacgatatgctgttggaattagccaagctgcaaccggtgacgttggcggaattggccaag
atccgcaatatcaacgaacgcaccgtcaaccgttacggtaaggccctgtgcgctctggtc
gaagaggccaggcagcggccgccgaagccgatggccggcaaggaaaacgcggtcaaaaag
aatcaacaacacgaagccatcttggatgtgttgagtgccgtggtcaggattcgtgccgag
gaaaattcgttgaacccggtgattctggcctcgcgcaaggacttggagcagttgttgttt
ggcgacgaagattgcctgttgctgcacggttggcgctacaacatggccggccgcgaattg
caaggcctgctgcagggcgattattcgctgagcctgaagccggaaggcgtggtcatcagc
gccgcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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