KEGG   Mesorhizobium japonicum MAFF 303099: mlr0349
Entry
mlr0349           CDS       T00043                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
mlo  Mesorhizobium japonicum MAFF 303099
Pathway
mlo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mlo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    mlr0349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mlo03019]
    mlr0349
Enzymes [BR:mlo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     mlr0349
Messenger RNA biogenesis [BR:mlo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     mlr0349
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: BAB47949
RhizoBase: mlr0349
UniProt: Q98N14
Position
245975..247378
AA seq 467 aa
MPSNVTAELSGFAALGITGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGK
TAAFALPILSKIIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGG
VSRFSQVKKVAPGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKR
IAKATAPDRQTALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQK
RQVLSTMLADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFR
EGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPS
ENSKLRQVERIIRTKLPIVADHLGSPDPQRNPAEKNERFEPANDRNDRNGRRDGRRPGGE
NKGNGFGKKRFGDKPAFAGERKPEGAKPFKGNNKRRFGGKRPAARAA
NT seq 1404 nt   +upstreamnt  +downstreamnt
ttgcccagcaacgtcaccgcggaactctccggtttcgcagcgctgggaatcacgggtgcg
ctgctcaaggccacccacaatgccggattcaccgaaccgaagccgatccagatgcaggca
atcccgccgcagctggaaggccgtgacattttcggcatcgcgcagaccggctccggcaag
accgcggcctttgcgctgcccatcctgtcgaagatcatcgcgctcggcaccaagcggcgc
gccaagacgacccgcgcgctgatcctggcgccgacccgcgaactcgccgtgcagatcgag
gataccatcaagatcctcgccaagggcgcccatgtctcgacggcactcgtgctgggaggc
gtctcgcgcttcagccaggtgaagaaggttgctcccggcgtcgatatcctgattgccacg
cccggccggttgaccgacctggtgcgcgagggcgacctcatcctctccgataccaaatgg
ctggtgctggacgagggcgaccgcatgctcgacatgggcttcatcaacgacgtcaagcgc
atcgccaaggcgaccgcgcctgaccgccagacggcgctgttctcggccaccatgccggac
gagatcgccgaactggcaaagggcctgttgaagaaccccgtccgcatcgaagtctcgccg
caaagcaccgcggcggctgagatcgtccagggcgtcgtcttcgcccgcaccaagcagaag
cgccaggtgctgtcgacgatgctcgcagacgaggcgatgaagtccgtcatcattttttcc
cgtaccaagcatggcgccgacagggtgaccaaggacctcgagcgcgatggcttcaaggcc
gccgtcatccatggcaacaagtcgcagaatgcccgtcagaaggcgctgaacgatttccgt
gagggatcggtccgcattctggtcgcgacggacatcgcggcgcgcggcatcgacgtaccc
ggcatcagccatgtcgtgaatttcgacctgccggacgaggctgaaagctacgtccaccgc
atcggccgcaccggccgcaacggcatggacggcatcgcgatcacgctttgcgatccttcg
gagaacagcaagctgcgccaggtcgagcgcatcatccgcaccaagctgccgatcgttgcc
gaccatctcggcagccccgatccgcagcgcaatccggctgaaaagaacgagcgcttcgag
cccgccaatgatcgcaacgaccgcaatggccgtcgcgacggcaggcggccgggcggcgag
aacaagggcaacggctttggcaagaagcgcttcggcgacaagccggcctttgccggtgag
cgcaagccggaaggcgccaagcccttcaagggcaacaacaagcgccgtttcggcggcaag
cgtccggcagcgcgggctgcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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