KEGG T04532: MSMAS

Methanosarcina mazei S-6: MSMAS_1116

Entry

MSMAS_1116        CDS       T04532

Name

(GenBank) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

mmj Methanosarcina mazei S-6

Brite

KEGG Orthology (KO) [BR:mmj00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmj03032]
    MSMAS_1116
   03400 DNA repair and recombination proteins [BR:mmj03400]
    MSMAS_1116
Enzymes [BR:mmj01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     MSMAS_1116
DNA replication proteins [BR:mmj03032]
Prokaryotic type
  DNA Topoisomerases
   MSMAS_1116
DNA repair and recombination proteins [BR:mmj03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      MSMAS_1116

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim Toprim_2 OEP Auto_anti-p27 ABC_tran_CTD

Other DBs

NCBI-ProteinID:

AKB64312

UniProt:

A0A0E3RJC1

Position

complement(1330913..1333411)

AA seq 832 aa
MTVVAFAEKNKAAAQIASILGEGEVDKISVEGLPAYEFKWKGEEWLVMGLSGHIMNYDFP
EKYNKWSEVDPGTLLGVDPEKFVTRKEYEAAIKNLAKRADKIILACDYDREGENIGFEAK
TLAEEVTDVPVARARFSALSPKEVRKAFENPVDPDHNLAMAAEARQILDLKMGAAFTRFV
TLSVREKARTKDVLSIGPCQTPTCGFVYEREKAIRAFEAKDFWKITAVFAAKGGEFEGTH
RAGNIHDKEKAAEIFKRLKGAKEGLVVKKTVKEAKTSPPNPLNTTEFLKRASKFLGISPE
VALETAEQLYLAGFTSYPRTETNKYADDFDFKSLVFDFARQKEYKPFAESILSAPIVPKN
GEKDAHDHPPIHPIRAAARGEVSSAVNIPQAAEVYDLIARHFLANLMPAAVFEKTHLHLQ
VKEEPFDSSGTVLKEPGWLEVYPFENKKDKLLPFVEEKERVDVKKLSNTKSKTSPPKKLT
EAELLTLMDRHGIGTKATAPTHIETNKKRGYFENKGKTISILDTGFTLMEGLSLSVPILV
KPDIRSKIEALIQEVEDGKKEFEAALADGTVLIKEMYAQLEANKKELTSNIAGTIKDEAA
LEDKKNYIGTCKACGHVLRIIQTDSGRFVGCTGYPDCRNSFSLPKTGALTVLRSKECKKE
GAAVLKVGNKYNWAVGIGPCFKCEFEKECYPPETVGPCPECDGSMFLISFKDNRFLGCTK
RCGYTHSVPKTGKLTLLDKTCETCGWKLFRLKEEVEGNESLEEDICINRRCTEGIKYWKK
VGPRSGARAQGKISADSGAELGARSTARNKERTTARRVSKTVSVADSRKDRK

NT seq 2499 nt +upstreamnt +downstreamnt
atgacagttgtcgcatttgcagaaaaaaacaaagcagcagcccagatcgccagcatcctt
ggcgaaggggaagtggataaaatatcagtggaagggctgcctgcctacgagtttaaatgg
aaaggagaagagtggcttgtgatggggctttccggccacatcatgaactacgactttcca
gaaaaatataacaaatggagtgaagttgaccccgggacactgcttggagttgatccggaa
aaatttgtgaccaggaaggagtatgaagctgcaataaaaaacctggcaaaaagggcagac
aaaattatccttgcatgcgactatgacagggaaggggaaaatatagggtttgaagcaaaa
acccttgccgaagaggtcactgatgtccctgttgcaagggcacgtttttcagccctttcc
ccaaaagaagtaaggaaagcctttgaaaaccctgtagatcctgaccacaaccttgctatg
gctgccgaagccaggcagattcttgacctgaagatgggggctgcatttacacgttttgtt
acgctctcggtcagggaaaaagcaaggacaaaagacgtcctttcaatagggccctgccag
actcctacctgcgggtttgtttacgaaagggaaaaggctatccgggcttttgaggcaaag
gacttctggaagattactgcggtttttgctgcaaaaggaggggaattcgaaggcacccac
agggcaggaaacatccatgacaaagaaaaggcagctgaaatcttcaagaggctgaaaggg
gcaaaagaaggactcgttgtaaagaagaccgtaaaagaagcaaaaaccagccctccaaat
ccacttaacaccacagagttcctgaagcgggcttcaaagttcctggggatcagccccgaa
gttgcactcgaaaccgcagaacagctctaccttgcagggtttacgagctacccgaggaca
gagaccaataaatatgcagatgactttgacttcaagtccctggtctttgatttcgcaagg
cagaaagagtataagccatttgcagaatcaatcctctctgccccgatagttccaaagaat
ggagaaaaagacgcacatgaccacccacctatccacccgatcagggcggctgcaagggga
gaggtcagttctgcagtaaatataccgcaggctgctgaagtttatgaccttattgcaagg
catttcctggcaaacctcatgcctgcagcagttttcgaaaaaacccacctccacctgcag
gttaaggaagagcctttcgactcctcggggaccgtgcttaaagaaccgggatggcttgag
gtttatccgtttgaaaataaaaaagataagcttctcccgtttgtagaggaaaaagagaga
gtagacgtaaaaaagctgagcaatacaaaatccaagaccagccctccgaaaaaactgaca
gaagccgaactcctgacccttatggacaggcacgggatagggacaaaagcaacagcccct
acacatatagaaacaaacaaaaagagggggtatttcgagaataaaggaaagacaatttca
atcttagatacaggttttacccttatggaagggctttccctgtccgtccctatccttgta
aaacctgatatccgctcaaagatagaagcccttatccaggaagttgaagacgggaaaaaa
gagttcgaagcggctcttgccgatggtacggtcctgattaaagagatgtatgcccagctt
gaagcaaacaaaaaagagcttacctcaaacattgcaggcacaataaaggatgaagccgcc
ctcgaagacaagaaaaattacatcgggacatgtaaggcttgcgggcacgttctcagaatc
atacaaacggattccgggcgttttgtgggctgcacaggctatcctgactgcagaaactcc
ttctctctacccaagaccggagcccttaccgtgctcaggagcaaggaatgtaaaaaagaa
ggggcagccgtcctgaaggtgggaaacaaatacaactgggctgttggtattggaccctgc
tttaaatgcgagtttgaaaaggagtgctatccccctgaaaccgtgggaccctgccctgaa
tgtgacggaagcatgttcctgatatctttcaaagacaaccgcttcctgggctgtacaaag
cgttgtggatatacccattccgttcctaaaaccggaaaactgaccctcctcgacaaaacc
tgtgagacctgcggctggaagctgttcaggctgaaagaagaggtagaaggaaacgaaagc
ctggaagaagatatctgcataaaccggcgctgcactgaaggaataaagtactggaaaaaa
gtgggacccagaagtggagcaagagcacagggcaagatttctgcagactctggagcagag
ctcggggcgagaagtacggcaagaaataaggaaaggacgacggctcgcagagtttcaaaa
actgtatcagtggcagacagcaggaaagaccggaagtga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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