KEGG   Methylomonas methanica: Metme_4334
Entry
Metme_4334        CDS       T01511                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mmt  Methylomonas methanica
Pathway
mmt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Metme_4334
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmt03021]
    Metme_4334
   03019 Messenger RNA biogenesis [BR:mmt03019]
    Metme_4334
Transcription machinery [BR:mmt03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Metme_4334
Messenger RNA biogenesis [BR:mmt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Metme_4334
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB Spore_III_AA AAA_25 Mor AAA AAA_22 ResIII
Other DBs
NCBI-ProteinID: AEG02683
UniProt: G0A324
Position
complement(4770007..4771263)
AA seq 418 aa
MNLTELKLKQVSEIIAIAESLGLENIDRARKQELIFSILKKQAKSGEDIFGDGVLEILQD
GFGFLRTPGCSYLAGPDDIYVSPSQIRRFGLRTGDTVSGKIRPPKEGERYFAMLKVESIN
FESPEHAKNKISFSNLTPLFANKRFRLEQGNGTSEDLTARIIDLVAPIGKGQRGLIVSPP
KAGKTMIMQSIAHAIAEKNPECYLIVLLIDERPEEVTEMERCVRGEVVSSTFDEPASRHV
QVADMVIEKARRMVEHKHDVVILLDSITRLARAYNMVVPSSGKLLSGGVDANALEKPKRF
FGAARNIEEGGSLTIIATALVETGSRMDEVIFEEFKGTGNMELHLERKIAEKRIYPAINI
NRSGTRREEYLVDPDELQKTWILRKILQPMDELAASEFLLGKLKDFKTNAEFFDSMKR
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgaatcttaccgagttaaaacttaaacaagtcagtgaaattattgctatcgccgaatcc
ctaggactagaaaatatcgacagagctcgaaagcaggaattaattttctccatactgaag
aaacaggcaaaaagcggtgaagatatatttggggatggtgttttagaaatattacaagac
ggttttggttttttgcgcacgcccggctgttcctatctggcgggaccggatgacatttac
gtctcgcccagccaaatcagacgtttcggtttacgcaccggcgatacggtcagcggtaaa
attcgtcctcccaaggaaggcgagcgttatttcgcgatgctaaaagtcgaaagcatcaac
ttcgaatcgcccgaacacgccaaaaacaaaatttccttttctaaccttacaccgttattt
gccaacaaacggttccgtttggaacagggcaacggtaccagcgaagacttaaccgcccgt
attatcgatttggttgcgcctatcggtaaaggtcagcggggcttgatcgtctctccgcca
aaggccggtaaaaccatgatcatgcaaagcattgcgcatgccatcgccgaaaagaatccg
gaatgctacctgatcgtgttgctgatcgacgagcgcccggaagaggtgacggaaatggag
cgctgcgtgcgcggcgaagtggtatccagtacctttgacgaaccggctagtcgccatgta
caggtcgcggatatggtgatcgaaaaagcccggcgcatggtcgagcataaacacgatgtg
gtcatcctgttagactccattacccgtctggcacgtgcctacaacatggtggtgccgtcc
tccggcaaattgttatcgggcggtgtggatgccaatgccctggaaaaacccaagcgtttc
tttggggcggccagaaacatcgaggaaggcggcagtttgaccattattgccactgccctg
gtggaaaccggctcccgtatggacgaagtgatttttgaggaatttaaaggcaccggcaac
atggagttgcatctggaacgtaaaattgccgaaaaacgtatttatcccgccatcaacatc
aaccgttccggcacccgccgcgaagaatatctggtcgacccggacgaactgcaaaaaacc
tggattttacgcaaaattttacagcccatggacgaattggcggcgtccgaatttttactg
ggcaaactcaaggactttaaaaccaatgccgagtttttcgattccatgaagcgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (24)   

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