KEGG   Mus musculus (house mouse): 233833
Entry
233833            CDS       T01002                                 
Symbol
Tnrc6a, 2010321I05Rik, 3110054G10Rik, CAGH26, D130023A07Rik, GW182, Tnrc6
Name
(RefSeq) trinucleotide repeat containing 6a
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    233833 (Tnrc6a)
   03036 Chromosome and associated proteins [BR:mmu03036]
    233833 (Tnrc6a)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     233833 (Tnrc6a)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    233833 (Tnrc6a)
SSDB
Motif
Pfam: TNRC6-PABC_bdg Ago_hook RRM_1 RRM_occluded
Other DBs
NCBI-GeneID: 233833
NCBI-ProteinID: NP_659174
MGI: 2385292
Ensembl: ENSMUSG00000052707
UniProt: Q3UHK8
Structure
Position
7:122630324..122794519
AA seq 1896 aa
MRELEAKATKDVERNLSRDLVQEEEQLMEEKKKKKDDKKKKEAAQKKATEQKIKVPEQIK
PSVSQPQPANSDNGTSTATSTNNNAKRATASNQQPPPPQQQQPQQEQQQQQPQALPRYPR
EVPPRFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSAVTNQQPQNNGEVQNSKS
QSDINHNTSGSHYENCQRGPVSSTSDCSTSCKNAVNDLLEKEAWPSAPGSDPELAPECID
ADSASNSESERNITVMASGNTGGEKDGLRNSTGLGSQSKFVVGSSSNNVGHGSSTGPWGF
PHGALISTCQVSVDAPESKPESSNNRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLEN
NGLALKGPVGSGSSGINIQCSTIGQMPNNQNINSKVSGSSTHGTWGSLQETCEPEVSGTQ
KVSFSGQPQNITTETTGPNNTTNFMTSSLPNSGSVQNNELPTSNPGAWRVSTMNHPQIQA
PSVMNGTSLSHLSNGESKTGGSYGTTWGAYGSNYSGDKCAGPNGQANGDTVNATLMQPGI
NGPMGTNFQVNTNKGGGVWEPGTVNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTGLSSV
EWNKLPSNQHSNDSANGNGKKLTNGWKSTEEDDQGSATSQTNEQNSVWAKAGGTVESDGS
AESTGRLEEKVTGESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWD
TETSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDS
KGSNCQGGWEDDSAATGMIKSNQWGGCKEDKSTWNDSQKSKQGWGDGQKSSQGWSISAGD
NWGESSRSNHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNINPNNSSGWDESSK
PNSSQGWGDPPKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPI
PAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNIPEASGRSDQ
QAQMHRLLPAASAVSSKETSSGSGWGEPWAEPSTPATTVDNGTSAWGKPIDSGPSWGEPI
TAASNASTWGSSSVGPQSLSKSGPKSMQDGWCGDDMPLPGSRPTGWEEEEDVEIGMWNSN
SSQELNSSLNWPPYTKKMSSKGLSGKKRRRERGMMKGGNKQEDAWINPFVKQFSNISFSR
DSPEENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRTVGKGPGSRPQISKESSMERNP
YFDKNGNPNMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAP
NNGGLNPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQRAQSQRSAPSANRQQQDQQG
RPLSVQQQMMQQSRQLDPSLLVKQQTPPSQQPLHQPAMKSFLDNVMPHTTPELQKGPSPV
NAFSNFPIGLNSNLNVNMDMNSIKEPQSRLRKWTTVDSMSVNTSLDQNSSKHGAISSGFR
LEESPFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNID
PETDPYVTPGSVINSLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYNVPL
SSTAQSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLS
TWDNSPLRVGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHG
PLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQS
LTPSPGWQSLGSSQSRLGSLDCSHSFSSRTDVNHWNGAGLSGANCGDLHGTSLWGTPHYS
TSLWGPPSSDPRGISSPSPINAFLSVDHLGGGGESM
NT seq 5691 nt   +upstreamnt  +downstreamnt
atgagagaattggaagctaaagctaccaaagacgtagagagaaatcttagcagggattta
gtgcaagaagaagaacagttgatggaagaaaagaaaaagaaaaaagacgacaagaaaaag
aaggaagctgctcaaaagaaggccactgaacaaaaaatcaaagtgccagaacagataaag
cccagtgtaagccagcctcagcctgccaactctgataacggcacttccacagcaaccagc
actaataataatgccaagcgagctacagccagcaatcagcagccgccgccaccgcagcag
cagcagccgcagcaagagcagcagcagcagcagccacaagccttgcctcggtatccacgt
gaagtacctccacgatttcgccaccaggaacacaaacagcttctgaagaggggtcagcat
tttcctgtcatagcagcaaacttgggatctgctgttaaggtgttaaacagccaatcagaa
agcagtgctgtaacaaatcaacagccacaaaataacggagaggtgcagaacagcaagagc
cagtcagatataaatcataatacttcaggatcccattatgaaaattgccagcggggacct
gtgtcttctacaagtgactgtagcacaagctgtaagaatgctgtaaacgacttgttggaa
aaagaagcatggccctcagcccctggcagtgatcctgagttggctccagaatgtatagat
gctgattctgcctccaattctgagtcagagagaaacatcactgtcatggcttcagggaac
acaggtggtgagaaagatggccttcggaacagcactggacttggttctcaaagcaaattt
gtggttggtagcagcagcaataatgtgggccatggaagtagtactggcccatggggcttt
ccccatggagccctaataagcacatgtcaggtctctgtggatgctcctgaaagcaaacca
gaaagtagtaacaataggatgaatgcttggggcactgtaagttcttcatcaaatggaggg
ttaaatccaagcactttgaattcagctagcaaccatggtgcctggccagtattagaaaac
aatggacttgccctaaaagggcctgtagggagtgggagttctggcatcaatattcagtgt
agtaccataggccagatgcctaacaatcagaatatcaactctaaagtcagtggctcttct
acccatggtacctggggtagccttcaggaaacttgtgagcctgaagtaagtggtacacag
aaggtttcattcagtggtcaacctcagaatatcaccactgaaacgactggaccaaataac
actactaactttatgacctctagtttaccaaactccggttcagtacaaaataatgaactg
cctactagtaatccaggggcctggcgtgtgagcacaatgaatcatcctcagatacaggct
ccgtcagttatgaatggcacttccctttctcaccttagtaatggagagtcaaaaactgga
ggctcctacggtactacatggggtgcctatggttctaattactctggcgacaaatgtgca
ggccctaatggccaagccaatggtgacactgtgaatgcaactctaatgcagcctggcata
aatgggcctatgggcactaactttcaagttaatacaaataaagggggaggtgtatgggag
cctgggacagtgaattcccagagttcaccatggggaagtggaaatggtgcaaattctgga
ggaagtcgaagaggatggggaagtcctgcacagaacactggcactggtctatccagtgtc
gagtggaacaaactgcctagcaaccagcattccaatgacagtgcaaatggcaatggtaag
aagcttacaaatggatggaaatctactgaggaagacgatcagggttctgccacatctcag
acaaatgagcaaaacagtgtgtgggccaaagcaggaggcacagtggagagtgatggtagt
gcagagagcactggacgccttgaagaaaaagtaaccggggaaagtcagagtagagataga
agaaaaattgatcagcacacattactccaaagcattgtaaacagaactgacttagatcca
cgtgtcctatccaactctgggtggggacagactcctattaagcagaatactgcctgggat
acagagacatcaccaagaggggaaagaaagactgacaatgggacagaggcctggggaagc
tctgcaacacagacttttaactcaggggcatgtacagataagactagccctaatagtaat
gatacctcatctgtatcagggtggggtgatcccaaacctactctgaggtggggagattcc
aaaggctcaaactgccagggggggtgggaagatgactctgctgctacaggaatgatcaag
agcaaccagtgggggggttgcaaggaagacaagtctacatggaatgattcgcaaaagagc
aaacaaggctggggtgacggacaaaagtcaagccaaggttggtccatttctgccggtgat
aactggggagaatcttccaggagtaaccattggggtgaggccaataagaaatccagctca
ggaggcagtgacagtgacaggtccatttctggttggaacgaacttgggaaaactagttct
tttacttggggaaataatataaatccaaataactcatcgggatgggatgaatcttctaaa
ccgaactcttcccaggggtggggagaccctccaaagtgtaatcagtctctaggttgggga
gattcatcaaagccagttagttctccagattggaacaagcaacaagacattgttggatca
tggggaatcccaccagccaccagcaagcctcctggtacaggctggctcgggggacctatt
cctgctccagcaaaggaggaagaacccacaggctgggaggagccatccccagaatctata
cgaagaaaaatggagatcgatgatggaacttcagcttggggagatccaagcaaatacaac
tacaaaaatgtgaacatgtggaataaaaacatcccggaagccagcggccgctcagaccag
caagcgcagatgcaccggctattgccagccgcaagtgccgtctcaagcaaggagaccagc
agtggctctggctggggtgagccttgggcagagccttctactccagccacaactgtggat
aatggtacttcagcctggggcaagcccatagacagtggtcccagctggggagaacccatt
actgcagcatccaatgcatccacgtggggctccagctctgttggtccacagtcattaagc
aaatctgggcccaaatctatgcaagatggctggtgtggtgatgatatgccattgcctgga
agtcgacccactggctgggaagaggaggaggatgtagagattggaatgtggaacagtaac
tcatctcaagagcttaactcatctttaaattggccaccatataccaagaaaatgtcatca
aagggtctgagtggcaaaaaaaggagaagggaaaggggaatgatgaaaggcggaaacaaa
caagaggacgcatggataaatccattcgttaaacagttttcaaatatcagtttttcgaga
gactcaccagaagaaaatgtacagagcaataagatggatctttctggaggaatgttacaa
gacaagcggatggagattgataaacatagcctgaatattggtgattacaatcgaacggtc
gggaaaggccctgggtctcggcctcagatttccaaagagtcttccatggagcgcaatcct
tactttgataagaatggcaatcccaatatgtttggtgttggaaacacagcagcacaaccc
cggggcatgcagcagcctccagcacaacctctcagttcatctcagcctaatcttcgtgct
caagtgcctcctccattactctcccctcaggttccagtttcattgctgaagtatgcacca
aacaacggtggcctgaatccgctctttggccctcaacaggtagccatgctgaaccagcta
tcccaactaaaccagctttctcagatctcccagttacagcgattgttagcgcagcagcag
agggcacagagtcagagaagcgcgccttctgctaaccgacagcagcaggaccagcagggt
cgacctcttagtgtgcagcagcagatgatgcaacagtctcgtcaacttgatccaagcctg
ctggtgaagcagcagactccgccttctcagcagccgctccatcagccagccatgaagtcc
ttccttgacaatgtcatgccccacactacacccgagctgcagaaagggccatcgccagta
aatgctttcagcaactttcctataggcttgaactcaaacttgaatgtaaatatggatatg
aacagtattaaagagccacagtcacgactaaggaagtggacaacagtggacagcatgtct
gtgaacacgtcgttggatcagaactccagcaaacatggtgctatttcaagtggttttagg
ctggaagagtctccatttgttccctatgactttatgaatagcagtacttcaccagccagt
cctccaggttcaataggagatggctggccacgtgccaaatcgcctaacggctctagcagt
gttaactggccaccagaatttcgccctggtgaaccatggaaaggttatccaaacattgac
cctgaaactgacccttacgtcactcctggcagtgtcataaacagtctttcaattaatact
gtgcgggaagttgaccacctcagggacaggaacagtgggtcatcctcatccttgaacacc
acgctgccttcaactagtgcctggtcatccattcgtgcctccaactacaatgttcccctc
agcagtacagcacaaagcacttcagccagaaatagtgattccaaattgacgtggtctcct
ggttcagttacaaacacctctctggctcatgagctgtggaaagtccctttgccacctaaa
aacatcactgctccgtcccgcccacctccggggctgactggtcagaagccacccttgtct
acgtgggataattctccccttcgtgtaggtggaggatggggaaattctgatgccagatat
accccaggctccagctggggtgagagcagctcagggagaataaccaattggcttgttctg
aagaacctcacacctcagattgatggctcaactctgcgcaccctgtgcatgcagcatggc
ccactgattacattccatctgaacctcccacatggaaatgctctggtccgttacagttca
aaagaagaggtagtgaaggcacaaaagtctctgcacatgtgtgtgctggggaacactact
attctcgctgagtttgccagtgaagaggagatcagtcgcttctttgcacaaagtcagtct
ctgaccccttctcctggctggcagtctctcgggtccagccagagccggctgggctctctc
gactgttcccactcgttctccagccggactgatgtcaatcactggaatggtgctgggctg
tcgggagctaactgtggagaccttcacggcacttccctctgggggaccccacattattcc
acaagcctgtggggtcccccgagcagcgacccccggggaattagcagcccatcccccatt
aatgcttttctttctgttgaccacctgggtgggggtggggagtccatgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (21)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (19)   
DNA sequence (57)   
   RefSeq(nuc) (19)   
   GenBank (19)   
   EMBL (19)   
3D Structure (1)   
   PDB (1)   
Protein domain (4)   
   Pfam (4)   
All databases (139)   

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