KEGG   Mus pahari (shrew mouse): 110332904
Entry
110332904         CDS       T05929                                 
Symbol
Pcdh1
Name
(RefSeq) protocadherin-1 isoform X1
  KO
K16498  protocadherin delta 1
Organism
mpah  Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mpah01009]
    110332904 (Pcdh1)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:mpah04515]
    110332904 (Pcdh1)
Protein phosphatases and associated proteins [BR:mpah01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     110332904 (Pcdh1)
Cell adhesion molecules [BR:mpah04515]
 Cadherins
  Protocadherins
   110332904 (Pcdh1)
SSDB
Motif
Pfam: Cadherin Protocadherin Cadherin_2
Other DBs
NCBI-GeneID: 110332904
NCBI-ProteinID: XP_021069919
Ensembl: MGP_PahariEiJ_G0018940
Position
15:complement(33235171..33260859)
AA seq 1216 aa
MGPLRPSPGPGGQRLLLPPLLLALLLLLAPSASHTTQVVYKVPEEQPPNTLIGSLAADYG
LPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQNQIPGNPCILEFEVSITD
LVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGSLFPIPLATDRDAGPNGV
ASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGNPPRAS
SALLRVTVLDTNDNAPKFERPTYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQA
PEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGATPKSARAQVVVTVKDMND
NAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQL
RQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDN
APVFTQSITEVAFPENNKPGEVVAEVTASDADSGSNAELVYSLEPEPAAQGLFTISPENG
EIRVKTSLDREQRDSYELKVVAADKGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVM
ENMPALSPVGMVTVIDGDKGENARVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYT
FQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSNTSHRLLTPQTRLGETVSQVTAE
DIDSGINAELTYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPR
YGTALVHLYVNETLANRTLLETLLVHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGVV
AVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKAAKGNKSKGKKSKSPKPV
KPVEDEDDTGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQP
QSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSKQLPHRRVTFS
ATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEME
HPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKLSTFVPYQDRG
GQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSATLEEIPLTQTSDFPPT
ATPASAQTAAKREIYL
NT seq 3651 nt   +upstreamnt  +downstreamnt
atggggcctctgaggcccagcccagggcctggggggcagcggttgctgctgcccccctta
ctgctggcactgctgctcctattggctccatctgccagccataccacccaggtagtatac
aaggtgccagaggaacagccgcccaacacccttattgggagccttgccgccgactacggt
ttgccagacgtgggtcatctgtataaactagaggtaggtgctccgtatcttcgagtggat
ggcaagactggagacattttcaccacagagacctccattgatcgagaggggctccgtgaa
tgccagaaccagatccccgggaatccctgtatcctggagtttgaggtgtcaatcacagac
ctcgtgcagaacggcagcccccggctgctagagggccagatagaggtgcaagacatcaat
gacaacacgccgaactttgcctcgccagtcattaccctggccatccccgagaacaccaac
atcggctcgctcttccccatcccgctggccacagaccgtgacgccggccccaatggcgta
gcatcctatgagctgcaggctgggcctgaggcccaggagttatttggactgcaggtagcc
gaggaccaggaggagaagcagccacagctcattgtcatgggcaacctggaccgtgaacgc
tgggattcctacgacctcaccatcaaggtacaggatggcggcaatcctccacgtgccagc
agcgccctgcttcgtgtcactgtgcttgatacaaacgacaacgcccccaagttcgagcgg
cctacctatgaagccgagctgtcagagaacagtcccattggccactcggtcatccaggtg
aaagctaacgactcagaccaaggtgccaatgcggagattgactacacgtttcaccaggca
cctgaggttgtcaggcgccttttgcgactagaccgaaacactggacttatcaccgtccag
ggtcccgtggaccgcgaggatctaagcactctgcgtttctccgtgcttgccaaggaccga
ggcgccacccccaagagtgcccgtgcccaggtagttgtgactgtgaaagacatgaacgac
aatgccccgaccatcgagatccgaggcatagggctggtgactcatcaagatggaatggct
aacatatcagaggatgtggcagaggagactgccgtggccttggtgcaggtgtctgatcga
gacgagggagagaacgcagccgtcacctgtgtcgtagcaggcgatgtgcccttccagcta
cgccaggccagcgagacgggcagcgacagcaagaaaaagtatttcctgcagaccaccacc
cctcttgactatgagaaagtcaaagactacaccatcgagatcgtggctgtggactccggc
aaccctccactctctagcaccaactccctcaaggtgcaggtggtagacgtcaatgacaat
gcccccgtcttcacccagagcatcactgaagtcgccttcccagaaaacaacaagcctggt
gaagtggtggccgaggtcacggccagtgatgctgactctggctctaacgcggagctggtg
tactcgctggaacctgagccagctgcccaagggctcttcactatctcgcccgagaatgga
gagatccgggtgaagacgtcactggatcgggaacagagagacagctatgagctgaaggtg
gttgcagccgacaagggcagtcccagcctgcagggcacagccacagtcctcgtcaatgtg
cttgactgtaatgacaatgaccccaaatttatgctgagtggctacaacttctcagtgatg
gagaatatgccagcgctgagtccagtgggtatggtgactgtcattgacggagacaagggg
gagaatgcccgggtgcagctctcagtagagcaggacaatggtgactttgttatccagaat
ggcacaggcaccatcttatccagcttgagcttcgatcgggagcaacagagtacctacacc
ttccaactgaaggccgtagatggcggcgtcccacctcgttcggcgtacgttggtgtcacc
atcaatgtgctggatgaaaatgacaatgcaccctttatcaccgccccctccaacacatct
caccgactgctgaccccgcagacacgtcttggtgagacagtcagccaggtgacagcggag
gacattgactctggtatcaatgctgagctgacctatagcatcgccggcggcaacccttat
gggctcttccagattggatcacattcaggcgccatcacgctggagaaggaaattgaacgg
cgccaccacgggttacaccgcctcgtggtgaaggtcagcgatcgtggtaagccccctcgc
tacggcacagccttagtccacctttacgtcaatgagaccttagccaaccgcacgctgtta
gagaccctcctcgttcatagcctggacacgcccctggatattgacatcgctggggatcca
gaatacgagcgttccaagcagcgtggcaacatcctctttggggttgtagcaggtgtggtg
gccgtcgccttactcatagccttggcggtactcgtgcgctactgccggcagcgggaggcc
aagagcggctaccaggctggtaagaaggagactaaggacctgtacgcccccaagcccagc
ggcaaagctgctaagggaaacaagagcaaagggaagaaaagcaagtcgccgaaacctgtg
aagccagtggaggatgaagatgacaccgggctgcagaagtccctcaagttcaacttaatg
agtgatgcccccggagacagtccccgaatccacctgcccctcaactacccaccaggcagc
ccggacttgggccgccattaccgctccaactccccactgccttctatccagctgcaaccc
cagtcaccctcggcctccaagaagcaccaggtggtgcaggacctgccgcctgcaaacaca
tttgtgggcactggggacaccacgtccacgggctccgagcagtactccgactacagctat
cgcaccaacccccccaaataccccagcaagcagttacctcaccgccgtgtcaccttctcg
gccaccagtcaggcccaggagctgcaggatccatcacaacacagttattatgacagtggc
ctggaggaatcggaaacgccctctagcaagtcatcctccggcccccgacttggtcccctg
gctcttccggaggaccactatgagcgtaccacccctgacggcagcataggtgaaatggag
caccccgagaacgacctccgccctttgcccgacgtcgccatgacgggcacatgtacccgg
gagtgcagcgagtttggtcactctgacacatgctggatgcctggccagtcgtctcccagc
cgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggaccgagga
gggcaggagcctgcgggcgccggaagccccagccccccggaagaccggaacaccaaaacg
gcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgactcctgc
aaggactcggccaccttggaggaaattcccttgacccagacctcggacttcccacccaca
gccacaccggcatctgcccagaccgccgccaagcgtgagatctacctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

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