KEGG   Mus pahari (shrew mouse): 110337873
Entry
110337873         CDS       T05929                                 
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
  KO
K14416  elongation factor 1 alpha-like protein
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03015  mRNA surveillance pathway
mpah05134  Legionellosis
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110337873 (Hbs1l)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05134 Legionellosis
    110337873 (Hbs1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpah03019]
    110337873 (Hbs1l)
Messenger RNA biogenesis [BR:mpah03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     110337873 (Hbs1l)
SSDB
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 HBS1_N GTP_EFTU_D2 MMR_HSR1 AAA_22 AAA_29
Other DBs
NCBI-GeneID: 110337873
NCBI-ProteinID: XP_021076582
Ensembl: MGP_PahariEiJ_G0023782
Position
21:44822351..44892643
AA seq 682 aa
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPEEEYGYEDLRES
SNSLLNHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDG
AQPLKERSERAVCAGQPSKGKSVISRSSQSESEIVPKVAKMTVSGKKQSMGFEVPGLTAE
ENGHNVRAPHRGPPGDDVSVASPNVPEIGTPKSGLPPPSLQTSEELGSTPTPGRKPGKLR
QQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKA
GKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEIT
GKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTKWYKGMCLLEQIDSFKPPQR
SIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVD
WAAAGDHINLTVVGMDIIKINVGCIFCGLKEPIKACTRFRARILVFNIEVPITKGFPVLL
HYQTVSEPAVLKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKEL
GRFMLRYGGSTVAAGVVTEIKE
NT seq 2049 nt   +upstreamnt  +downstreamnt
atggcccggcatcggaacgtccggggctataactacgacgaagattttgaagatgatgat
ctctatggccagtctgtggaggatgactattgcatctcaccttcaacagctgctcagttc
atttactcacgccgtgacaaccctgaagaagaatatggctacgaagatctgagagagtct
tctaattctcttttgaatcaccaattaagtgaaattgaccaagctcgcctgtattcatgc
ctcgatcacatgagagaggtactgggggacgctgtgcccgatgacatactgactgaggca
attctgaaacacaaatttgatgtgcagaaggctttgtccgtggttctggaacaagatggt
gcgcagcctttgaaggagaggagtgagagagcagtgtgtgcaggacagccttcaaaagga
aaatcagttatatctcggtcatcccagagtgaatctgaaattgtgccaaaagttgctaaa
atgactgtatccgggaagaagcagagcatgggatttgaagtgcctggcttaactgctgag
gaaaatggacacaatgtgcgtgctcctcacagagggcctcctggtgatgatgtgagcgtc
gcttctcctaacgttcctgagatcggcactccgaaatctggcctcccacctccctccctt
caaacatcagaagagctgggctccactccgaccccagggagaaagcctggcaagctgagg
cagcagatagacgtgaaagcggaattggaaaagcggcagggcgggaagcagctcctcaac
ttagtggtcattggtcatgttgatgctgggaaaagtactctgatgggccatatgctttat
cttctgggtaatgtaaacaaaagaactatgcataagtatgagcaagaatctaaaaaggct
ggcaaggcttcatttgcatatgcgtgggtcttggatgaaactggagaagaaagggaaagg
ggagtaacgatggatgtaggcatgacgaagtttgaaaccacgaccaaagttattacctta
atggatgctccagggcataaggatttcattccgaacatgatcacaggagcggcccaggct
gacgtagctgtcttggtcgttgatgccagcagaggagagttcgaagctggatttgagacg
ggaggacagacccgagagcatggccttttggtccgatctcttggagtgacacagcttgct
gtggctgtcaataaaatggatcaggtaaattggcaacaagaaagatttcaagagattact
ggaaaacttgggcactttctcaagcaagcaggttttaaggagagtgatgtagcttttatc
ccgacgagcggcctgagtggtgagaatttaaccgcaaggtcacagtccagtgacctcacg
aagtggtacaaagggatgtgcttattggagcagattgattccttcaagccccctcagcgc
tcgattgacaaaccttttagattatgtgtgtctgatgtcttcaaagatcaaggatctggc
ttttgtgtgactggtaaaattgaagctggttacatccagactggtgaccgactgttagcc
atgccacccaatgaaacctgtactgctaaaggaatcactctgcatgatgagcctgtcgac
tgggcagcagcaggcgatcacattaatctcactgtggttgggatggacatcattaagatc
aatgtcggctgcatattctgtggcctcaaagaacccattaaggcttgcacccgcttcaga
gctcggatcctcgtcttcaatattgaagttcctatcactaaagggtttcctgtgctgcta
cactaccaaaccgtcagtgagcctgctgttcttaagcgattgattagtgtcctaaacaaa
agtactggtgaagtcacaaagaagaagcccaagttgctgaccaagggccagaacgccttg
gtagagctgcagacacaaagaccggtggctcttgaactctacaaagacttcaaggagctg
gggcggtttatgctgcgttacggtggctccacggtagctgccggtgttgtcactgagata
aaagagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (7)   
   Pfam (7)   
All databases (26)   

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