KEGG   Methanolacinia petrolearia: Mpet_0847
Entry
Mpet_0847         CDS       T01312                                 
Name
(GenBank) Exoribonuclease II
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mpi  Methanolacinia petrolearia
Pathway
mpi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mpet_0847
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpi03019]
    Mpet_0847
   03016 Transfer RNA biogenesis [BR:mpi03016]
    Mpet_0847
Enzymes [BR:mpi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Mpet_0847
Messenger RNA biogenesis [BR:mpi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Mpet_0847
Transfer RNA biogenesis [BR:mpi03016]
 Prokaryotic type
  tRNA degradation factors
   Mpet_0847
SSDB
Motif
Pfam: RNB RNase_II_C_S1 S1
Other DBs
NCBI-ProteinID: ADN35618
UniProt: E1RJA0
Position
complement(860587..862062)
AA seq 491 aa
MSSRVNLEAIAYETMERYGFNPFYPATVIRETDSIEKDEREYNTNSPGIKDLRRLMWSSI
DNYDSMDLDQIEYCERGENGEINVKVAIADVDIFVHKNSETDRFAAFNGTSVYTGVKTFP
MLPDRLSKGISSLLPDDWHSAIVIEYAVLLDGSVRYGELYRALVANSAKLIYEEVGDWLE
GTGPAPGNFAEIPGLAKQVKLQYEAAKRLKEFRRRSGSLELETPEAEVVMNGNQVAEIVE
QKQNSARNLIEEFMVAANKTITAFLEKAGIPMIHRIVRTPKHWDGIVFTAMELGEKLPSE
PDGKALSKFLIRQRESDPDRFPDLSLTIVKLMGAGEYVAFRPGKEPVGHFALAVKDYTHG
TAPNRRYVDLVIQRLVKSVLDGRKSPYKYRELDELSDWLSERDQMAKKAERFMLKAAAGV
LLQKSVGRIFDAMVTGASQKGTYVRILDPPVEGKVVQGGEKLYVGEKVQVRLLSTSPEKG
YIDFEYIGGRR
NT seq 1476 nt   +upstreamnt  +downstreamnt
atgagcagcagggtcaatcttgaagcaattgcatacgaaacaatggagagatacgggttc
aatccgttctatcccgcaacggtgataagggagaccgattcgatcgaaaaagatgaacgt
gaatacaatacaaacagtcccggaataaaagatctgagacgcctgatgtggtcctcgatc
gacaactacgactcgatggacctcgaccagatagaatactgcgagagaggagaaaacggc
gagatcaatgtaaaggtcgcgatcgcggacgtcgacatttttgttcataagaactcggag
accgacagattcgcggcattcaacggaacttcggtctatacgggagtaaaaacgttcccg
atgcttcccgacaggctctcgaaagggatctcgtcccttctccccgacgactggcactcc
gcaatagtaatagaatacgcggtcctcctcgacggctcggtgagatacggggaactctac
agggcgcttgtggcaaacagcgccaaattaatttatgaagaagtcggcgactggctcgaa
gggaccggaccggcgccggggaattttgcagagatcccgggcctggcaaagcaggtgaaa
ctccagtacgaggcggcaaagcggctgaaggaattccggagaaggagcggttctcttgaa
ctggagacgccggaggccgaggttgttatgaacggaaaccaggtggcggagatagtggag
cagaaacagaactccgcccgcaacctgatcgaggagttcatggtcgcggccaacaagacc
ataaccgcatttcttgagaaggcgggaatcccgatgatccaccggattgtaaggacaccc
aaacactgggacgggatcgtattcaccgcgatggaactcggcgaaaaactcccgagcgaa
cccgacggaaaggcactgtcgaagtttctcatccggcagagggaaagcgatcccgaccgg
ttccccgatctttcgcttacgatcgtcaaactcatgggagcaggtgaatacgtcgccttc
aggccgggaaaagagccggtcggccattttgctcttgcggtaaaggactacacccacgga
accgccccgaacaggcgctatgtcgatctcgtcatccagagactcgtcaaatccgttctc
gacggaagaaagagcccttacaaatacagggagctcgacgagctctccgactggctctcg
gagagggaccagatggcaaagaaagccgagagattcatgcttaaagctgcggcaggagtt
cttctccagaaaagtgttggcaggatcttcgatgcgatggttaccggtgcatcacagaaa
gggacatacgtacgtatcctcgatccgcctgtcgaaggaaaggtggttcagggcggagag
aaactctacgtcggcgagaaggtgcaggtccgcctgctctccaccagcccggagaaaggg
tatatagacttcgagtatatcggcggcaggagatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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