KEGG   Marinobacter psychrophilus: ABA45_17350
Entry
ABA45_17350       CDS       T03980                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mpq  Marinobacter psychrophilus
Pathway
mpq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABA45_17350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpq03019]
    ABA45_17350
   03016 Transfer RNA biogenesis [BR:mpq03016]
    ABA45_17350
Enzymes [BR:mpq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     ABA45_17350
Messenger RNA biogenesis [BR:mpq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ABA45_17350
Transfer RNA biogenesis [BR:mpq03016]
 Prokaryotic type
  tRNA degradation factors
   ABA45_17350
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 IFT20
Other DBs
NCBI-ProteinID: AKO53984
UniProt: A0A0H4I4M2
Position
3823139..3825115
AA seq 658 aa
MLNADAISQLRQLKSNIEEHKVVLSGTVKATNGRFGFVALDDGRDVFLPPEEMQKVLPGD
RINVTEKEVEKGKTQGLVEELLNSSLDTFVGRYQVKGKGHFVVPETAGINRWIFIPPKER
NGAQPGDYIYCRLHRHPIKDGKGQARVLRVIGQAGDAGIERALTMAGFDLSDAWPEAVQQ
HAQALSEDAIAAHSAGREDRCSQPYVTIDSPGTQDMDDALLAVPNATGWALSIAIADPTA
LIEPGSATEREAMRRATAIYFPGEPLPMLPDAASTRLCSLQPDTTRLALVCDLQVNNDGS
LGDYSFHQASIRSHGKLSYELVANLIDGREDDDIKALSSAVSNSLDQLHQAATALRRWRV
EHALISGDRTEFRLRLDENRRIRSIEPTVQNEAHRLVEECMVAANRCAADFLSQHNKGLF
ICHSGLRADRHVNIRKLLEQHMPQLAELDVAQAESFKTLMKTADSLNADAPVKSIVARQL
ARAELAFSPAPHQGMGLAAYTTFTSPLRKFTDFYVHRVIKSLIWQAPLEELDNNALSTLQ
ATLIQARQAANSLENWLKSDFAKTLGEDDMGGVISRTIPAGFFVRLNCNGLEGFVSCRDL
DGKYSFDPVTLRLIHNKNGRIFQLDQAVIVRLTGVDDERRQINLTLQEPKQEPVPASA
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgctcaatgccgacgctatcagccagttgcgccagctgaaatctaatatcgaagaacac
aaagtggttctttccggcaccgtaaaagcaaccaatggccgctttggctttgttgctctg
gacgacggcagagatgtgtttcttccgcccgaggaaatgcaaaaagtgctgcccggcgac
cgcatcaacgtcaccgaaaaggaggtcgagaaaggcaaaacccaaggcttggtagaagag
ctgctgaacagctcgctggatacttttgtaggccgctaccaggtcaagggtaaaggccac
tttgtggtgccggaaacagcgggcattaaccgctggatcttcataccgccaaaagagcgt
aacggcgcccagcccggtgattacatatattgccgcttgcaccgccacccgatcaaagac
ggcaaaggccaggcccgggtactgcgggtaataggccaggccggcgatgccggtattgag
cgggcgctgaccatggccggttttgatttgtctgacgcatggccagaggcagtgcagcaa
cacgcccaagcgctcagtgaagacgcaatagccgcacacagcgcagggcgagaagaccgc
tgctcgcagccctatgtcactatcgacagccctggcacccaagacatggacgacgcccta
ctggcggtgccaaacgccaccggctgggcgctgtcgattgccattgcagaccccaccgca
ttgattgagccaggcagcgccaccgaacgcgaagccatgcgccgagccaccgccatttac
ttcccgggggagccgctgccgatgctgcccgatgccgccagcacccgcttgtgttcgctg
cagcccgatacgacgcgcctggctttagtgtgcgatttgcaggttaacaacgatggcagt
ctgggcgattacagttttcaccaggccagcatccgctcccacggcaagctcagttatgaa
ctggttgccaacttgattgacggccgcgaagacgacgacattaaagccctgtcgtcagcc
gtgtctaacagtctggaccaactgcaccaggccgctacggcgctgcggcgctggcgcgtc
gaacacgctcttattagtggtgaccgcacggagttccgcctgcggctggacgaaaaccgc
cgtattcgcagcatcgaacccacagttcaaaatgaagcccaccgcctggtagaagagtgc
atggtagcggccaaccgctgcgccgccgactttctgtcgcagcacaacaaaggtctgttt
atttgtcatagcggcctgcgcgccgaccgtcacgtcaacatccgcaagctgctggaacag
cacatgccacagcttgccgagctggatgttgcccaggcagagagtttcaaaacactgatg
aaaaccgccgacagcctgaacgcggatgccccggtaaaatccattgtcgcgcgccaactg
gctcgcgccgaactggccttcagccccgcaccgcaccagggtatggggcttgctgcctac
accacgttcacatcgccgctgcgcaagttcaccgacttttacgtacaccgggtgattaaa
tcgctgatctggcaggcgccgttggaagaattggacaacaacgccctcagcacgcttcag
gcgactctgatacaggctcgccaggccgccaacagcttagagaactggcttaaaagcgac
tttgcaaaaacgttgggcgaagatgacatgggcggcgtaattagccgcaccattcccgcc
ggcttttttgtgcgcttaaattgcaacggcttggaaggatttgtcagctgccgtgacctg
gatggaaaatacagttttgacccggtcaccctgcgcttgattcacaacaaaaatggccgc
atcttccaactcgaccaggccgttatcgtgcgcctgaccggggtggatgacgaacgccgt
cagatcaatctgacgctgcaggagccgaagcaggaacctgtcccagcatctgcgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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