KEGG   Myroides profundi: MPR_0128
Entry
MPR_0128          CDS       T03631                                 
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
mpw  Myroides profundi
Pathway
mpw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mpw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    MPR_0128
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mpw03400]
    MPR_0128
Enzymes [BR:mpw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MPR_0128
DNA repair and recombination proteins [BR:mpw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      MPR_0128
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD Helicase_C CarD_TRCF_RID ResIII RecG_dom3_C UB2H
Other DBs
NCBI-ProteinID: AJH13347
UniProt: A0A0B5RSQ5
Position
complement(145544..148906)
AA seq 1120 aa
MDIKQRFQESSKTKQLLQDLQSRGNKIYLKGLIGSAISFQIEALFREADAPFLLIFNDKE
EAAYYLNDLETLVNKTDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRISSRKKPAIIVS
YTEAIFEKVVTKKVLEKNTLKVHQGDKLSIDYINEVLFEYNFKRVDFVAEPGEFSVRGGI
IDVFSFSNDNPYRIEFFGDEIDSIRTFDVETQLSVDKQKKITIIPNVENKFSAEVRESFL
EYISEKTIVLTQHTAMTVEQLDRQFDRAVDTFSKLNKDLKHKEPKDMFLDGQSFLHKLEL
FTLLELNDTKLMDVNKTVEFHIKPQPSFNKQFDLLARNLNDNTDNGFYNYLFCSNENQAK
RFKDIFESLKEDDNHKVVQSFKTIVMPIFEGFIDEEKQIVCYTDHQIFERYHKFSIKNGY
TKKQTITLKELNSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYVSI
HSLHKISKYNGKDGAVPKIHKLGSAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQC
APDSYLQHELESSFIYEDTPDQLKATQEVKADMEQERPMDRLVCGDVGFGKTEVAIRAAF
KMVDNGKQVAILVPTTILAFQHYQTFTERLKDMPVRVSYINRFRTAKQKAEILKDLESGK
IDILIGTHQLVNKGIVFKDLGLLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTL
QFSLMAARDLSVISTPPPNRYPIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIR
EVAGMIQRLVPDAKVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTI
LINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGL
NIAMKDLEIRGAGDILGGEQSGFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEEN
KVFVKDTQIDTDFEILFPDEYINNITERLNLYNELSLITNEEVLQQYEQRLIDRFGALPR
QAIALLNSLRIKWHAANMGIEKIVMKQGKMICYFLGDQQSDFYQSAKFRKVLIFVQHRSN
ICEMKEKQTKNGLRLLLTFKNVKSIKQGLEYIELLDSAEA
NT seq 3363 nt   +upstreamnt  +downstreamnt
atggatattaaacaacgctttcaagagtcttcaaaaacaaaacaactcctccaagaccta
cagtctagaggtaataaaatatatctaaaaggattaataggctcggctatctcatttcag
atagaagccttattccgagaagctgatgctccttttttattaatattcaatgataaagaa
gaagctgcttattacctaaatgatctagagacattagtcaataaaactgatgttctcttc
tacccaggttcttatagaagaccttatcagatagaagaaacagataatgctaatgtacta
ctacgtgcagaggtattgaatagaattagttctcgtaagaagcctgctatcattgtttct
tatacagaggctatattcgaaaaagtggttactaaaaaggtattagaaaaaaatacactt
aaagtacatcagggagataaactatctatagactacatcaatgaggtattgtttgagtac
aattttaaacgagttgatttcgtagctgagccgggagagttctctgtaagaggaggaatt
atagacgtattctctttctctaatgacaatccgtaccgtatagaattcttcggagacgaa
atagatagtatccgtaccttcgatgtagaaactcagttatctgtagataaacaaaagaaa
atcactatcattcccaacgtagagaacaaattctctgcagaggtaagagagagtttctta
gaatatatttctgagaagactattgtactaacgcagcatactgctatgacagtagaacag
ctagaccgtcagttcgatagagctgtagataccttctctaagttaaataaagatttaaag
cacaaggaaccaaaagatatgttcttagacggacaatctttcttacataagctagagcta
tttacgttactggagctgaatgataccaaactgatggatgtcaataagaccgttgagttt
cacatcaaacctcaaccttcgtttaacaaacagtttgacttactggctcgtaacctgaat
gacaatacagacaatgggttctataactacctattctgctctaatgagaatcaggctaag
cgcttcaaagatatatttgagtctcttaaagaagatgataatcacaaagtagtacaatca
ttcaagacaatcgtgatgccgatcttcgaagggtttatcgatgaggagaagcaaatcgtc
tgctatactgaccaccaaatcttcgaacgctatcacaagtttagtatcaagaatggatat
actaaaaaacaaacgatcacactaaaagagctaaactctctttcggtaggtgattatgta
acgcatatagatcatggtatcggtaagttcggagggttacaaaaaatacaagtagaagga
aagacacaagaggctatcaagctagtatatgctgataatgatatcgtctatgtaagtatt
cactctctacacaaaatatcaaaatacaatggtaaagatggggctgtacctaagatccat
aaattaggttcggctgcatggaaaaccttgaagaataaaacaaaggctcgtgttaagcac
attgcctttaaccttattcaactatatgcaaaacgccgtttgcagaaaggattccaatgt
gcccctgatagctatttacagcatgaattagaaagttcttttatctacgaagacactcct
gatcagctaaaagcgacacaagaggtaaaggccgatatggaacaagaaagaccaatggat
cgattggtatgtggggatgtaggttttggaaaaactgaggtagctattagagctgccttt
aaaatggtcgataatggcaaacaagtcgcaatattagtccctacgactatcctagccttt
cagcattatcagacattcacagagcgtctgaaggatatgcctgtacgtgtgtcttatatc
aatagatttagaactgctaaacaaaaagcagaaatattaaaagacctggaatctggtaag
atagacatcctaatcggtacacatcagttagtgaataaaggcattgtgtttaaagaccta
gggttattaattatagatgaagaacaaaaattcggagtagctgtaaaagataagttgaaa
acgatatcagagaatgtggatacacttacacttactgctacacctatcccgcgtacacta
cagttctctctgatggctgcacgcgacttatctgtgataagcactcctccaccaaataga
tatcctatcgaaacaaatgtggtaggatttaatgaagaggtgattagagatgctgtgtct
tatgagatagaaagaggtggtcaagtgtacttcatcaataatcgtatagagaatattaga
gaagtagcgggtatgatacaacgtctcgtaccagatgctaaagtaggtatcggccatggt
cagatggatggtaaaaagttagaagaactaatgctcgcatttatgaatggggagttcgat
gtactcgttgctactaccattatcgagagtggattagacgtacctaatgctaatacaata
ttaattaataacgcaaataacttcgggctatctgacttacatcagatgagaggtcgtgta
ggacgaagtaataaaaaagcgttctgttacttcatctgtcctccttattctgcgatgaca
gaagaagcgagaaagagaatacaggcactagagcaatttagtgacttgggtagtggtcta
aacatcgctatgaaagacttagagattagaggagctggtgatatcttaggaggtgaacag
agtggtttcatcaatgaaataggattcgagacgtatcaaaagatcatgcaagaagctatc
gaagagcttaaggctaacgagtttaaagacctatacgaagaagagaataaagaagaaaac
aaggtattcgtaaaagatactcagatagatactgacttcgagatattgttccctgatgag
tatattaataatatcacagagcgactaaacttgtataacgaactgagcttaatcacgaat
gaagaagtcttgcagcagtatgaacagcgattaatagaccgattcggtgcactgccacgt
caggctattgctttattaaatagcttacgcatcaaatggcatgcagctaatatgggaata
gaaaagatcgtgatgaaacaaggaaagatgatttgttacttcttaggagatcaacagtca
gacttctatcaatctgctaaatttagaaaggtattaatcttcgtacaacatcgttctaat
atctgtgagatgaaagagaaacaaacaaagaatggactgagactcttacttacttttaaa
aatgtaaagtctatcaaacaaggtttagaatacattgaacttttggattcagctgaagct
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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