KEGG   Mycolicibacterium smegmatis MC2 155: LJ00_11745
Entry
LJ00_11745        CDS       T03433                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
msb  Mycolicibacterium smegmatis MC2 155
Pathway
msb03030  DNA replication
msb03410  Base excision repair
msb03420  Nucleotide excision repair
msb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LJ00_11745
   03410 Base excision repair
    LJ00_11745
   03420 Nucleotide excision repair
    LJ00_11745
   03430 Mismatch repair
    LJ00_11745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msb03032]
    LJ00_11745
   03400 DNA repair and recombination proteins [BR:msb03400]
    LJ00_11745
Enzymes [BR:msb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LJ00_11745
DNA replication proteins [BR:msb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LJ00_11745
DNA repair and recombination proteins [BR:msb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LJ00_11745
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LJ00_11745
   MMR (mismatch excision repair)
    DNA ligase
     LJ00_11745
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LJ00_11745
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH BRCT_2
Other DBs
NCBI-ProteinID: AIU07547
Position
2443209..2445314
AA seq 701 aa
MSEKATGEVEAELPEHPDADERRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQ
ALEDAHPELRTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFDSDELTAWAARISSET
GDAAHFLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIDDIPERLTPSDE
FPVPAVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLR
MICHGIGYTEGFTPASLHDAYRALGAWGLPVSEHTTKVSTVAEVAERIAYWGEHRHDVEH
EIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTGRVTPFAY
MEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREF
EFPTHCPECGTELAPAKEGDADIRCPNSRSCPAQLRERLFHLAGRGAFDIEGLGYEAATA
LLAAQVIPDEGDLFTLTADDLLRTELFTTKKGELSANGKRLLANLTKAKEQPLWRVLVAL
SIRHVGPTAARALATEFGSLEAIEAASEEELAAVEGVGPTIAAAVKDWFTVDWHRAIVDK
WRAAGVRMADERDASIERTLEGLSIVVTGSLAGFSRDQAKEAIIARGGKAAGSVSKKTAY
VVAGDAPGSKYDKAVELGVPVLDEDGFRRLLEQGPPVEPAE
NT seq 2106 nt   +upstreamnt  +downstreamnt
gtgagcgagaaggcaaccggagaagtcgaagcggaactgcccgaacatcctgacgccgac
gagcggcggcgctggcaggaacttgccgacgaggtgcgcgaacaccagttccggtactac
gtcaaggacgcgccgatcatctcggacgcggagttcgacaagctgctgcgcgaactgcag
gcgctcgaggacgctcatcctgagttgcggacgcccgattcacccacccagctggtgggc
ggcgccgggttcgccaccgagttcgcgcccgccgagcatctggaacggatgctgtcgctg
gacaacgtgttcgattccgacgagctgaccgcgtgggccgcccgcatcagcagcgagacc
ggcgacgcggcgcatttcctgtgcgagctcaagatcgacggtgtcgcgctgtcactggtg
taccgcgacggcaggctcgagcggggcgccacccgcggcgacgggcgcaccggcgaggac
gtcacgctcaacgcgcgcaccatcgacgacatccccgagcggttgacgccctccgacgag
ttcccggtgcccgccgtgctcgaagtgcgcggcgaggtcttcttccgtgtcgccgacttc
gaggagctcaacgcgggtctggtggccgagggcaagccgccgttcgccaatccccgcaac
agcgcggccggttcgctgcgccagaagaaccccgcggtcaccgcgcgccgcaagctgcgg
atgatctgtcacggcatcggatacaccgagggcttcaccccggcgtcgctgcacgacgcc
taccgcgcactcggggcgtggggcctaccggtgtccgagcacaccaccaaggtgtccacc
gtcgccgaggtcgccgaacgcatcgcctactggggcgagcaccgccacgacgtcgagcac
gaaatcgacggtgtggtggtcaaggtcgacgaggtcgcgttgcaacgccgcctcggggcg
acctcgcgcgcgccgcgctgggccgtggcctacaagtacccgcccgaggaggccaccacc
aagctgctcgacatccgggtcaacgtcggccgcaccggcagggtcacgccattcgcctac
atggaaccggtcaaggtggccgggtccaccgtgggcctggcgaccctgcacaacgcctcg
gaggtcaaacgcaagggcgtgctgatcggcgacaccgtggtgatccgcaaggctggcgac
gtcatccccgaggtgctggggcctgtcgtcgacctgcgcgacggcaccgagcgggagttc
gagttcccgacgcattgccccgagtgcggaaccgagttggccccggcgaaggagggcgac
gccgacatccgctgccccaactcgcgcagctgcccggcgcagctgcgggagcggctgttc
cacctcgccggtcgtggtgccttcgacatcgaggggctgggctacgaggcggccacggct
cttcttgccgcacaggtgatcccggatgagggggacctgttcaccctcaccgccgatgac
ctgctgcgcaccgaactgttcaccaccaagaagggtgagctctcggccaacggcaagcgt
ctgctggccaacctcaccaaggccaaggagcagccgctgtggcgggtgctcgtcgcgctg
tccatccggcatgtcgggcccaccgcggcgcgcgcactggccaccgagttcggcagcctg
gaggccatcgaggcggcgtcggaagaggagctggccgcggtcgagggcgtcggccccacc
atcgccgcggccgtcaaggactggttcaccgtcgactggcaccgtgcgatcgtcgacaag
tggcgcgcggccggggtgcgcatggccgacgaacgcgacgccagcatcgagcgcacgctc
gaaggactctcgatcgtggtgaccggatcgctggccggcttcagccgcgaccaggccaag
gaggcgatcatcgcgcgcggcggcaaggccgcgggttcggtgtcgaagaagaccgcctac
gtggtggccggcgacgcgccagggtccaagtacgacaaggcggtcgaactcggcgtgccg
gtcctcgacgaggacgggttccgccggctgctcgaacaggggccgccggtcgagccggcc
gagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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