KEGG   Methylocystis sp. SC2: BN69_3161
Entry
BN69_3161         CDS       T02324                                 
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
msc  Methylocystis sp. SC2
Pathway
msc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN69_3161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msc03019]
    BN69_3161
   03016 Transfer RNA biogenesis [BR:msc03016]
    BN69_3161
Enzymes [BR:msc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BN69_3161
Messenger RNA biogenesis [BR:msc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BN69_3161
Transfer RNA biogenesis [BR:msc03016]
 Prokaryotic type
  tRNA degradation factors
   BN69_3161
SSDB
Motif
Pfam: RNB S1 CSD2
Other DBs
NCBI-ProteinID: CCJ08612
UniProt: J7QA82
Position
complement(3256077..3258452)
AA seq 791 aa
MPPASYMSDAECARPPRRTAILLPLLSEPLAKDDKAKHAAKHAAKHAPSREDILAFISRE
TEAGGPRKIGVREIARAFGVTGDDRIAIKRMLAELADEGVLEKRGKRVTRKGTLPPVALV
DIIARDRDGEMIAAPVEWDEDELGAAPRIRIQAPRRARPGEPLPGVGDRALVRAEPDRDA
GPNDPPYVGRVVKLLSRQRQRVLGVLHIEANGAGRIEPIDKKQAGRELAVAAADIGEGKH
GDLVSIDLVGKTRFGAPRARVRETLGSVTGEKAVSLIALRAHDIPDVFRREATAEAERAQ
PASLHGREDWRDLPLVTIDPPDAKDHDDAVHAAPDDAPDNDGGFVITVAIADVAHYVTPR
SALDRDALERGNSVYFPDRVVPMLPERISNDLCSLRPNEDRPALAVRMRVTSKGRKIDHS
FHRVMMRSHAKLAYAQAQDAIEGRTDDTTKPLLAPVLKPLYAAHEALQHARNLRAPLDLD
LPERKILLKKDGSFDRVIIPPRLEAHRLIEEFMILANVAAAETLEQHRQQLIYRAHDEPS
REKVSALSEFLATIGVKLAKGQALRPAHFNVILDRVKGLEHENIVNEIILRTQAQAEYTH
ENYGHFGLNLRRYAHFTSPIRRYADLIVHRALIRALKFGEGALPDMPVGELAEIAARISA
AERRAMAAERETVDRLIAHHLADQIGARFQARISGVTRSGLFVRLAETGADGFVPAATLG
REYFAYDEAAHALTSRSGVSYRLADIIEVKLIEAAPIAGALRFEVVSGGERRAPPPRAKK
ERERKPARRKR
NT seq 2376 nt   +upstreamnt  +downstreamnt
ttgccgccggcgtcctatatgagtgatgccgaatgtgcacgcccgccgcgccgaacggcg
attttattgcctcttttgagcgagcccttggcgaaagacgacaaagcaaaacacgcggcg
aaacacgcggcgaaacacgcgccctctcgcgaagacattctcgccttcatctcccgcgaa
accgaggcgggcggcccgcgcaagatcggcgtgcgtgaaatcgcccgcgccttcggcgtg
accggcgacgaccggatcgccatcaagcgcatgctcgccgaactcgctgacgaaggcgtt
ctggaaaagcgcggcaagcgcgtgacccgcaaggggacgctgccgcctgtcgcgctcgtc
gacatcatcgcgcgcgaccgcgacggcgagatgatcgccgcgccggtcgaatgggacgag
gacgagctgggcgcggcccctcgcattcgtatccaggcgccgcgccgcgcccggccgggc
gagcccctgcccggcgtcggcgaccgcgcgctcgttcgcgccgaaccagatcgcgacgca
ggtccgaacgatccgccctatgtcggtcgcgtcgtcaaactcctgtcgcgtcagcgccag
cgcgtgctcggcgtgctgcatatcgaagcgaacggcgccggccgcatcgaaccgatcgac
aagaaacaggccggccgcgagctcgccgtcgccgccgccgacatcggcgaaggaaagcac
ggcgatctcgtctcgatcgatctcgtcggcaagacgcgctttggcgcgccgcgcgcccgc
gtgcgcgagactttgggctcagtaacgggcgaaaaggcggtgagcctgatcgcgctgcgc
gcgcatgacattcccgacgtctttcgccgcgaggcgacggcggaggccgaacgcgcgcag
ccggcgtctctacacgggcgcgaagactggcgcgacctgccgctcgtcaccatcgatccg
ccggacgccaaggatcacgacgacgcggtccacgccgcgccggatgacgcgcccgacaat
gacggcggattcgtcattacggtcgcgatcgccgacgtcgcgcattatgtgacgccgcgc
tcggcgctcgaccgcgacgctttggagcgcggcaattcggtgtatttccccgaccgcgtc
gtgccgatgctgcccgaacgcatctccaacgatctgtgctccttgcggcccaatgaagat
cggccggcgctcgccgtgcgcatgcgcgtcaccagcaagggcaggaagatcgaccatagt
tttcatcgcgtgatgatgcgttcgcacgccaagctcgcctatgcgcaggcgcaggacgca
atcgagggccgcaccgacgacacgacaaagccgctgctcgcccccgtgctcaagccgctt
tacgccgcgcatgaagcgctgcagcacgcccgcaatctgcgcgccccgctcgatctcgat
ctgcccgagcgcaagatccttctgaaaaaagacggctccttcgaccgcgtcatcattccg
ccgcggctcgaagcgcatcggctgatcgaagaattcatgattctggccaatgtcgcggcc
gccgaaacattggagcagcatcgccagcagctgatctatcgcgcgcatgacgaaccttcg
cgcgaaaaggtctcggcgctttcggaatttctcgcgacgatcggcgtcaagctcgccaag
ggccaagcgctgcgcccggcgcatttcaacgtgatcctcgatcgcgtgaagggcttggag
catgagaacatcgtcaacgagatcattctgcgcacccaggcgcaggccgaatatacgcat
gagaattacgggcatttcggcctcaatctgcgtcgctacgcgcatttcacctcgcccatc
cgccgctacgccgatctgatcgtgcatcgcgcgctcatccgcgcgctgaaattcggcgaa
ggcgccctgcccgacatgccggtcggcgaacttgcggagatcgccgcccgcatctcggcc
gccgaacggcgcgcgatggcggcggagcgcgagaccgtcgatcggctcatcgcgcatcat
ctcgccgaccagatcggcgcgcgctttcaggcgcgcatttccggcgtgacgagatccggt
ctgttcgtgcgcctcgccgagacgggcgccgatggattcgtgccggcggcgacgctgggc
cgcgaatatttcgcctatgacgaagcggcgcatgcgctgacctcgcgctccggcgtcagc
taccggctggcggatattatagaagtgaagctgatcgaggcggcgccgatcgccggcgcc
ttgcgattcgaagtcgtgagcggcggcgaacgccgcgccccgccgccgcgcgcgaaaaag
gaacgtgagcgaaagccggcgcgccgcaaaagatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

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