KEGG   Metallosphaera sedula DSM 5348: Msed_0210
Entry
Msed_0210         CDS       T00509                                 
Name
(GenBank) AAA family ATPase, CDC48 subfamily
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
mse  Metallosphaera sedula DSM 5348
Brite
KEGG Orthology (KO) [BR:mse00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mse03019]
    Msed_0210
   03009 Ribosome biogenesis [BR:mse03009]
    Msed_0210
   04131 Membrane trafficking [BR:mse04131]
    Msed_0210
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mse04147]
    Msed_0210
Messenger RNA biogenesis [BR:mse03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     Msed_0210
Ribosome biogenesis [BR:mse03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    Msed_0210
Membrane trafficking [BR:mse04131]
 SNARE
  SNARE associated proteins
   Others
    Msed_0210
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    Msed_0210
Exosome [BR:mse04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Msed_0210
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N CDC48_2 RuvB_N AAA_16 AAA_2 AAA_22 AAA_5 TIP49 AAA_14 AAA_33 AAA_18 IstB_IS21 AAA_28 nSTAND3 RNA_helicase Mg_chelatase ATPase_2 Vps4_C AAA_24 UFD1 AAA_17 DUF815 AAA_3 Parvo_NS1 AAA_7 ATP-synt_ab AAA_25 NB-ARC TsaE ABC_tran Zeta_toxin NACHT Bac_DnaA NTPase_1 PhoH
Other DBs
NCBI-ProteinID: ABP94387
UniProt: A4YD85
Position
171221..173527
AA seq 768 aa
MSAGSSPEQRSPRRELSLKVMEARQKDVGRGKVRIDVEMLAQIDVSPGDVVEIEGTRKTA
AIAWPLSPDDATSERDIIRMDGITRKNAGVSIGDKVIVRKASVKQAASIKLAPSNFSITV
DPGFVAYVKKKLKEFPLVEGDTVLIPVLGQAIPFTVIQVRPASIVMVVDETSISISDKPI
EQTRYPRVTYEDIGGMKNVIQKIRELVELPLRHPELFKRLGIEPPKGIMLYGPPGVGKTL
LAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFIDEVDAIAPKR
DEVIGEVERRVVAQLLTLMDGLESRGNVIVIAATNRPNAVDPALRRPGRFDREIEIPLPD
KQGRLEILQIHTRNMPLSKDVELEKLADISHGYTGADLSALVREAAMNALRRYLPMIDIS
QDKIPPEILERMEVKMEDFMNAFKEIVPSGMREIYIEVPEVKWDDIGGLNEIKEELREVA
EYPLKFPDYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVG
ESERAIREIFRKARMYAPSVIFFDEIDAIAPMRGISSDSGVTERLVNQLLAEMDGIENLD
NVVIVAATNRPDILDPALLRPGRFEKLMYVPPPDKNARYDILKVHTKKVALSDEVNLEEL
AERTEGYTGADLAALVREAAMRAIREGMRECVNRVSAACPPNDKDCRDAKMRDCMKGATI
KVENRHFNEALTKVKPSLSQEMIQFYQTWIDKARQQLPRQTVKPSTFT
NT seq 2307 nt   +upstreamnt  +downstreamnt
ttgagtgctggttctagcccagagcaaaggtcgccaagacgagagttgtctctgaaggtg
atggaagcaaggcaaaaggatgttggtagaggaaaggtaagaatagacgttgagatgctt
gcacaaatcgatgttagtccaggtgatgtagtggagattgagggtactagaaagacggca
gcaatagcgtggccactgtccccagatgacgccactagcgagagagatataatcagaatg
gatggcataactaggaagaacgcaggtgtctccattggagacaaggtgatagtaaggaag
gcctctgtgaagcaagctgcatccatcaaacttgccccttccaacttttcgattaccgta
gatccaggtttcgtggcatacgtcaagaagaagcttaaggagttcccactggttgaaggt
gacactgttcttatcccagtgctgggtcaggctattcccttcacggtaatacaggtcaga
ccggcgtcgattgtgatggttgtcgacgagaccagtatttccatctctgacaagcccata
gagcagaccaggtatcccagggtcacgtacgaggatataggaggaatgaaaaacgttata
cagaagatcagagaacttgtggagttaccgttgagacatccagaactcttcaagaggttg
ggaatcgagccaccaaaggggatcatgttatacggtcctccaggtgtgggtaagaccctg
ctggccaaggctgttgccaatgaaactgaatcctatttcacctcaataaacgggccagag
ataatgagcaagttctacggcgagagcgagcagaggctcagggagatcttcgaagatgct
aagaaacatgccccagccataatattcattgatgaagtagacgccatagctcccaagagg
gatgaggttataggagaggtagagagacgtgttgtcgcgcagttgctgacactcatggat
ggtctagagagtaggggaaatgtaatagtcattgcagctaccaacaggccaaatgcagta
gatcctgcactgagaaggcctgggagatttgaccgtgaaatagagatacccctaccagat
aagcagggcagactggaaatacttcagatccacactaggaacatgccactttcaaaggac
gtggaactggagaaattggctgatataagtcatggctatactggggccgacctttctgcc
ctagtcagggaggctgcaatgaacgccctgagaagatatttgcccatgatagatatcagt
caggacaagatcccgccagagatcctagagagaatggaagtcaagatggaggacttcatg
aatgcattcaaggaaattgtgcccagcggcatgagagagatctacattgaggttccagag
gtaaagtgggatgacataggcggtctcaacgagattaaggaagagcttagagaggtagca
gagtatccgctgaagttcccagactactatgaaaccgcaggagtggaaccaccaaaggga
atactcctgtttggacctccaggcacaggtaagaccatgctggcaaaggctgtagcaacc
gagagcggagcgaactttattgctgtgagaggtcctgaagttctctctaagtgggtaggg
gagagtgagagggcaatcagggagatatttagaaaggcgagaatgtatgcaccatcggtg
atattcttcgacgaaatagatgccatagctcccatgaggggaatctcctctgactctggt
gtaactgagagactagttaaccaacttctagctgagatggatggcatagagaacctagac
aacgttgttattgtggcagctaccaataggccagatatactagatccagccctactgagg
cctggaaggttcgagaaacttatgtacgtacccccacctgacaagaacgctagatatgac
atactaaaggttcacaccaagaaggttgctctctcggacgaagttaacctagaggaacta
gctgagaggacagagggatatacaggcgccgatctggcagccttggttagggaggctgca
atgagggccatcagagaagggatgagggaatgcgtaaatagggtcagtgcagcttgtcca
cctaatgataaggattgtcgcgacgcgaaaatgagagattgcatgaagggcgcaacaatt
aaggtggagaacaggcatttcaacgaagccttaactaaggttaagccatcgctcagccag
gagatgatacaattctatcagacatggattgataaggcaagacagcaactaccaagacag
actgtgaagcccagtacgtttacgtga

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Ontology (5)   
   KEGG BRITE (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (37)   
   Pfam (37)   
All databases (56)   

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